ROUGE

Gene/Protein Characteristic Table for mKIAA0791

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129217
Description :	Nuclear pore complex protein Nup155.
Clone Name :	mpf00383 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 6136 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1864 bp

Genome contig ID gi65543215f_7796919
PolyA signal sequence
(AATATA,-23)
+----*----+----*----+----*----+----
TGAGTACACCTGAATATATTTCTACTTTTATCTTC
Flanking genome sequence
(150280 - 150329)
----+----*----+----*----+----*----+----*----+----*
TCCTGCGATTACGGATTTCTTTTTCACAATACCGTAGAATGCAATTCCGT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0791 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0791	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..4272
Length: 1423 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q99P88	100.0	Nuclear pore co...	Mus musculus
AAH50919	99.9	Nucleoporin 155...	Mus musculus
EDL75690	98.4	nucleoporin 155...	Rattus norvegicus
P37199	97.3	Nuclear pore co...	Rattus norvegicus
BAE26607	99.9	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004870 44 1416 PF03177 Non-repetitive/WGA-negative nucleoporin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004870	44	1416	PF03177	Non-repetitive/WGA-negative nucleoporin

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 24 46 YKAVATIADMPSVLGSMMVASTS

130 151 GHMQCNCMMGVFPPISRAWLTI

192 214 HVRHLLVLATPVDIVILGLSYAN

Method	From	To	amino acid sequence
SOSUI	24	46	YKAVATIADMPSVLGSMMVASTS
130	151	GHMQCNCMMGVFPPISRAWLTI
192	214	HVRHLLVLATPVDIVILGLSYAN

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1864 bp
Genome contig ID	gi65543215f_7796919
PolyA signal sequence (AATATA,-23)	+--------+--------+----*----+---- TGAGTACACCTGAATATATTTCTACTTTTATCTTC
Flanking genome sequence (150280 - 150329)	----+--------+--------+--------+--------+----* TCCTGCGATTACGGATTTCTTTTTCACAATACCGTAGAATGCAATTCCGT

Gene/Protein Characteristic Table for mKIAA0791

Features of the cloned DNA sequence

Features of the protein sequence