ROUGE

Gene/Protein Characteristic Table for mKIAA0303

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129114
Description :
Clone Name :	mbg07543 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 5372 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2519 bp

Genome contig ID gi65535943r_98830828
PolyA signal sequence
(AATAAA,-17)
+----*----+----*----+----*----+----
TGCAGTTGCATAACATTGAATAAAAATTTAGCATG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAGATGACTTGCGTGTTTCTTCGAGCATGTACAGATACATGCCATATAC

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0303 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0303	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..2850
Length: 950 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EDL00765	100.0	mCG115541 [Mus ...	Mus musculus
XP_920400	100.0	microtubule ass...	Mus musculus
Q811L6	99.7	Microtubule-ass...	Mus musculus
XP_283179	99.7	microtubule ass...	Mus musculus
XP_226732	86.0	similar to micr...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan NULL 494 519 PS50325 NULL

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	NULL	494	519	PS50325	NULL

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2519 bp
Genome contig ID	gi65535943r_98830828
PolyA signal sequence (AATAAA,-17)	+--------+--------+----*----+---- TGCAGTTGCATAACATTGAATAAAAATTTAGCATG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAGATGACTTGCGTGTTTCTTCGAGCATGTACAGATACATGCCATATAC

Gene/Protein Characteristic Table for mKIAA0303

Features of the cloned DNA sequence

Features of the protein sequence