ROUGE

Gene/Protein Characteristic Table for mKIAA0090

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129052
Description :	RIKEN cDNA C230096C10.
Clone Name :	mbg13527 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 4843 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1863 bp

Genome contig ID gi65493515f_138133896
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TGACCACGCTCCTGGAATAAAGCTGATGATCAGTG
Flanking genome sequence
(124821 - 124870)
----+----*----+----*----+----*----+----*----+----*
GCTCAGCTTTGTTTTGTGTCTTCAGAGTTCACTTCAAGGCTGCTTTTGAT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0090 DNA sequence

KIAA	Alignment based on:
KIAA0090	DNA sequence

Features of the protein sequence	Description

Coding region: 2..2980
Length: 992 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI29805	100.0	C230096C10Rik p...	Mus musculus
CAM16114	99.6	novel DUF1620 d...	Mus musculus
EDL13308	99.3	RIKEN cDNA C230...	Mus musculus
XP_001091700	93.5	similar to CG29...	Macaca mulatta
XP_001504430	93.1	similar to CG29...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR011678 718 991 PF07774 Protein of unknown function DUF1620

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR011678	718	991	PF07774	Protein of unknown function DUF1620

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 1 22 ASGFWIWAAVLLVPVAAVYEDQ

174 196 VYSYGSGVVWALGIVPFSHVNIV

957 978 DDYDYVLISSVLFGLVFATMIT

Method	From	To	amino acid sequence
SOSUI	1	22	ASGFWIWAAVLLVPVAAVYEDQ
174	196	VYSYGSGVVWALGIVPFSHVNIV
957	978	DDYDYVLISSVLFGLVFATMIT

How to obtain mKIAA clone(s) How to obtain anti mKIAA antibodies Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1863 bp
Genome contig ID	gi65493515f_138133896
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TGACCACGCTCCTGGAATAAAGCTGATGATCAGTG
Flanking genome sequence (124821 - 124870)	----+--------+--------+--------+--------+----* GCTCAGCTTTGTTTTGTGTCTTCAGAGTTCACTTCAAGGCTGCTTTTGAT

Gene/Protein Characteristic Table for mKIAA0090

Features of the cloned DNA sequence

Features of the protein sequence