ROUGE

Gene/Protein Characteristic Table for mKIAA0069

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AF172088
Description :	ARL-6 interacting protein-1.
Clone Name :	mpj01876 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 2056 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1387 bp

Genome contig ID gi65511124r_111894763
PolyA signal sequence
(ATTAAA,-16)
+----*----+----*----+----*----+----
TTTGTGGTAAAGGGGAAAAATTAAAAACCAGTTGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACCCTTTTGTCTCACTTTCTTTGTTAACTCTGAGTTTATGAATCTAACT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0069 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0069	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..669
Length: 222 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAF27313	2.4e-98	100.0	TBX2 protein [M...	Mus musculus
Q9JKW0	2.5e-87	100.0	ADP-ribosylatio...	Mus musculus
AAP83442	4.2e-87	99.5	ADP-ribosylatio...	Rattus norvegicus
BAC41038	8e-87	99.5	unnamed protein...	Mus musculus
BAE39919	1.8e-86	99.5	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 61 83 AWFPPAIMGVVSLLFLIIYYLDP

89 111 VSCFVMFLCLADYLVPILAPRIF

156 178 YFMTMIISLAAVAWVGQQVHNLL

180 202 TYLIVTFVLLLPGLNQHGIILKY

Method	From	To	amino acid sequence
SOSUI	61	83	AWFPPAIMGVVSLLFLIIYYLDP
89	111	VSCFVMFLCLADYLVPILAPRIF
156	178	YFMTMIISLAAVAWVGQQVHNLL
180	202	TYLIVTFVLLLPGLNQHGIILKY

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1387 bp
Genome contig ID	gi65511124r_111894763
PolyA signal sequence (ATTAAA,-16)	+--------+--------+----*----+---- TTTGTGGTAAAGGGGAAAAATTAAAAACCAGTTGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACCCTTTTGTCTCACTTTCTTTGTTAACTCTGAGTTTATGAATCTAACT

Gene/Protein Characteristic Table for mKIAA0069

Features of the cloned DNA sequence

Features of the protein sequence