ROUGE

Gene/Protein Characteristic Table for mFLJ00207

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK131156
Description :	Fatty acid transport protein 3 (Fragment).
Clone Name :	mph02076 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 3521 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 2759 bp

Genome contig ID gi65492966r_90095659
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TGGAGTCATTATTTTGTAATAAACAGCTGGAGCTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATCTGGCCCATCTTCGAGAGTCTGTGGGGCTGCTTGCACATGCTCCACAT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00207 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00207	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..708, 933..1337, 2004..2285
Length: 465 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD21406	7.9e-182	100.0	mFLJ00207 prote...	Mus musculus
AAH60052	7.1e-86	90.0	Slc27a3 protein...	Mus musculus
EDL15145	7.1e-86	90.2	mCG22222, isofo...	Mus musculus
EAW53276	3.6e-78	73.2	solute carrier ...	Homo sapiens
BAC86050	3.8e-78	70.6	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

ProfileScan NULL 29 58 PS50319 NULL

ScanRegExp IPR000873 310 321 PS00455 AMP-dependent synthetase and ligase

Search method	interpro_ID	From	To	Entry	Definition
ProfileScan	NULL	29	58	PS50319	NULL
ScanRegExp	IPR000873	310	321	PS00455	AMP-dependent synthetase and ligase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 25 47 TMAALLLLLPLLLLLPLLLKLDV

175 197 PGATVALLLPAGPDFLWIWFGLA

Method	From	To	amino acid sequence
SOSUI	25	47	TMAALLLLLPLLLLLPLLLKLDV
175	197	PGATVALLLPAGPDFLWIWFGLA

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	2759 bp
Genome contig ID	gi65492966r_90095659
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TGGAGTCATTATTTTGTAATAAACAGCTGGAGCTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATCTGGCCCATCTTCGAGAGTCTGTGGGGCTGCTTGCACATGCTCCACAT

Gene/Protein Characteristic Table for mFLJ00207

Features of the cloned DNA sequence

Features of the protein sequence