ROUGE

Gene/Protein Characteristic Table for mFLJ00057

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK131122
Description :	helicase (DNA) B.
Clone Name :	mpm06310 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4547 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1197 bp

Genome contig ID gi65524842r_119561313
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TAGACCTTTGTGAGAAATAAATCCACTATTCTTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACTTCATCGCCCAGTCTGTGGTTTTCTTTTATAATAACACGAGGAATTAA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00057 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00057	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 105..3350
Length: 1081 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAD21372	100.0	mFLJ00057 prote...	Mus musculus
EDL24397	100.0	helicase (DNA) ...	Mus musculus
BAB20809	99.9	DNA helicase B ...	Mus musculus
Q6NVF4	99.9	DNA helicase B.	Mus musculus
XP_576229	83.3	similar to heli...	Rattus norvegicus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

- - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Method	From	To	amino acid sequence
-	-	-	-

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1197 bp
Genome contig ID	gi65524842r_119561313
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TAGACCTTTGTGAGAAATAAATCCACTATTCTTTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACTTCATCGCCCAGTCTGTGGTTTTCTTTTATAATAACACGAGGAATTAA

Gene/Protein Characteristic Table for mFLJ00057

Features of the cloned DNA sequence

Features of the protein sequence