Miyakogusa Predicted Gene

chr6.LjT16B20.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT16B20
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q348_VITVI 493 56.2 67.0 (tr|A7Q348) Chromosome chr12 scaffold_47, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029149001 PE=4 SV=1
TAIR_pep AT3G07810.1 395 63.8 74.2 | Symbols: | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | chr3:2492881-2495058 FORWARD
Medicago IMGA|AC148526_13.4 704 74.5 82.2 RNA-binding region RNP-1 (RNA recognition motif) chr02_pseudomolecule_IMGAG_V2 6339165-6343189 E EGN_Mt071002 20080227
Soybean Glyma14g00970.1 481 56.3 65.4  
3' Unigene KMC002184A_C01 71.9 91.1 91.1 KMC002184A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr6.LjT16B20.40.nc length: 478 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 8.5e-23 6-75
108-178
HMMSmart SM00360 no description 7.7e-25 5-76
107-179
ProfileScan PS50102 RRM 18.564 4-80
106-183
no_ID  
Gene3D 3.30.70.330 no description 7.2e-23 2-94
102-197
HMMPanther PTHR10432 RNA-BINDING 1.1e-131 1-86
103-185
253-375
HMMPanther PTHR10432:SF14 RNA-BINDING 1.1e-131 1-86
103-185
253-375
Seg seg seg NA 86-103
340-357
superfamily SSF54928 RNA-binding 2.2e-22 88-225
2-81
Wolf-PSORT
chr6.LjT16B20.40.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr6.LjT16B20.40.nc Not targeted -47.643 -21.179 -11.478 69.98% -14.986