Miyakogusa Predicted Gene

chr3.CM1570.200.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM1570
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL A7PY51_VITVI 640 52.5 61.9 (tr|A7PY51) Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026303001 PE=4 SV=1
TAIR_pep AT2G45620.1 619 47.4 57.8 | Symbols: | nucleotidyltransferase family protein | chr2:18800017-18802824 FORWARD
Medicago IMGA|AC139744_8.4 142 30.3 49.7 PAP/25A core; PAP/25A-associated chr02_pseudomolecule_IMGAG_V2 27302498-27299355 H EGN_Mt071002 20080227
Soybean Glyma03g02290.1 830 59.8 66.9  
3' Unigene KMC002184A_C01 61.9 89.1 89.1 KMC002184A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr3.CM1570.200.nc length: 744 aa.
IPR002058 PAP/25A-associated
method AccNumber shortName E-value location
HMMPfam PF03828 PAP_assoc 1.7e-24 643-702
no_ID  
HMMPanther PTHR12271 POLY(A) 3.1e-83 475-742
HMMPanther PTHR12271:SF14 POLY(A) 3.1e-83 475-742
ProfileScan PS50153 PAP 40.171 461-602
ProfileScan PS50154 PAP_CORE 19.504 547-602
ProfileScan PS50155 PAP_ASSOCIATED 16.853 643-707
Seg seg seg NA 25-46
73-102
228-232
308-324
superfamily SSF81301 Nucleotidyltransferase 1.8e-39 415-569
superfamily SSF81631 Poly(A) 7.7e-14 570-740
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr3.CM1570.200.nc 744 0.249 0.238 0.014 0.673 _ 3
Wolf-PSORT
chr3.CM1570.200.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr3.CM1570.200.nc Not targeted -32.062 -3.608 -1.056 35.00% -27.398