database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
---|---|---|---|---|---|
TrEMBL | A7PY51_VITVI | 640 | 52.5 | 61.9 | (tr|A7PY51) Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026303001 PE=4 SV=1 |
TAIR_pep | AT2G45620.1 | 619 | 47.4 | 57.8 | | Symbols: | nucleotidyltransferase family protein | chr2:18800017-18802824 FORWARD |
Medicago | IMGA|AC139744_8.4 | 142 | 30.3 | 49.7 | PAP/25A core; PAP/25A-associated chr02_pseudomolecule_IMGAG_V2 27302498-27299355 H EGN_Mt071002 20080227 |
Soybean | Glyma03g02290.1 | 830 | 59.8 | 66.9 | |
3' Unigene | KMC002184A_C01 | 61.9 | 89.1 | 89.1 | KMC002184A_c01 |
chr3.CM1570.200.nc | length: 744 aa. | |||
IPR002058 | PAP/25A-associated | |||
---|---|---|---|---|
method | AccNumber | shortName | E-value | location |
HMMPfam | PF03828 | PAP_assoc | 1.7e-24 | 643-702 |
no_ID | ||||
HMMPanther | PTHR12271 | POLY(A) | 3.1e-83 | 475-742 |
HMMPanther | PTHR12271:SF14 | POLY(A) | 3.1e-83 | 475-742 |
ProfileScan | PS50153 | PAP | 40.171 | 461-602 |
ProfileScan | PS50154 | PAP_CORE | 19.504 | 547-602 |
ProfileScan | PS50155 | PAP_ASSOCIATED | 16.853 | 643-707 |
Seg | seg | seg | NA | 25-46 73-102 228-232 308-324 |
superfamily | SSF81301 | Nucleotidyltransferase | 1.8e-39 | 415-569 |
superfamily | SSF81631 | Poly(A) | 7.7e-14 | 570-740 |
Name | Length | cTP | mTP | SP | other | Loc. | RC |
---|---|---|---|---|---|---|---|
chr3.CM1570.200.nc | 744 | 0.249 | 0.238 | 0.014 | 0.673 | _ | 3 |
chr3.CM1570.200.nc nucl 13
entry_id | prediction | score | sppta | spptna | fp | profile |
---|---|---|---|---|---|---|
chr3.CM1570.200.nc | Not targeted | -32.062 | -3.608 | -1.056 | 35.00% | -27.398 |