Miyakogusa Predicted Gene
- chr3.CM0243.200.nc
- Related links:
- Predicted Sequence Links:
- Genome Sequence: CM0243
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q93XZ7_ARATH |
287 |
65.2 |
75.6 |
(tr|Q93XZ7) Putative uncharacterized protein At5g42570; K16E1.4 (At5g42570) OS=Arabidopsis thaliana GN=At5g42570/K16E1.4 PE=2 SV=1 |
|---|
| TAIR_pep |
AT5G42570.1 |
287 |
65.2 |
75.6 |
| Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11905.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24012.1); contains InterPro domain B-cell receptor-associated 31-like; (InterPro:IPR008417) | chr5:17038687-17039725 REVERSE |
|---|
| Medicago |
IMGA|AC174309_7.5 |
364 |
82.3 |
86.8 |
B-cell receptor-associated 31-like; Prefoldin chr04_pseudomolecule_IMGAG_V2 11086807-11082013 F EGN_Mt071002 20080227 |
|---|
| Soybean |
Glyma12g10400.1 |
366 |
81.4 |
87.8 |
|
|---|
| Lotus Consensus |
KMC003531A_C01 |
44.1 |
93.3 |
93.3 |
KMC003531A_c01 |
|---|
| 3' Unigene |
AV766407 |
1124 |
99.8 |
99.8 |
MWM104a09_f |
|---|
| 5' Unigene |
AV428992 |
509 |
99.6 |
99.6 |
MWM104a09_r |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr3.CM0243.200.nc |
length: 221 aa. |
| IPR008417 |
B-cell receptor-associated 31-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005783 |
endoplasmic reticulum |
|
|
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Biological Process |
GO:0006915 |
apoptosis |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR12701 |
BCR-ASSOCIATED |
6.5e-105 |
1-214 |
| HMMPfam |
PF05529 |
Bap31 |
3.4e-07 |
4-192 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
107-128
142-212 |
| HMMPanther |
PTHR12701:SF1 |
BCR-ASSOCIATED |
6.5e-105 |
1-214 |
| Seg |
seg |
seg |
NA |
43-56 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
2 |
24 |
| 42 |
64 |
| 87 |
109 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr3.CM0243.200.nc |
221 |
0.013 |
0.020 |
0.948 |
0.069 |
S |
1
|
- Wolf-PSORT
chr3.CM0243.200.nc vacu 5, chlo 3, E.R._vacu 3, golg 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr3.CM0243.200.nc |
Twilight zone |
-9.025 |
-0.012 |
-0.542 |
3.21% |
-8.471
|