Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003531A_C01 KMC003531A_c01
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568607.1| expressed protein; protein id: At5g42570.1, sup... 111 1e-23
dbj|BAB09328.1| gene_id:K16E1.4~unknown protein [Arabidopsis tha... 111 1e-23
gb|AAM62748.1| unknown [Arabidopsis thaliana] 111 1e-23
gb|AAM98189.1| unknown protein [Arabidopsis thaliana] 92 6e-18
gb|AAO37960.1| unknown protein [Oryza sativa (japonica cultivar-... 67 3e-10
>ref|NP_568607.1| expressed protein; protein id: At5g42570.1, supported by cDNA:
1558., supported by cDNA: gi_15450825 [Arabidopsis
thaliana] gi|15450826|gb|AAK96684.1| Unknown protein
[Arabidopsis thaliana]
Length = 218
Score = 111 bits (278), Expect = 1e-23
Identities = 53/90 (58%), Positives = 70/90 (76%)
Frame = -1
Query: 748 RKTMEAVKKQSRGSDDGKAAHSEEIRAMEEDTTKLRAEINRLESELKSKTKEVDGAEANV 569
RKTME KKQ+RG +DGK EE++A+ E+ L+A+I LESE +SK KE+ GA+
Sbjct: 118 RKTMETAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGET 177
Query: 568 SALRKQSEGFLLEYDRLLEENQNLRNELQS 479
ALRKQ++GFL+EYDRLLE+NQNLRN+L+S
Sbjct: 178 EALRKQADGFLMEYDRLLEDNQNLRNQLES 207
>dbj|BAB09328.1| gene_id:K16E1.4~unknown protein [Arabidopsis thaliana]
Length = 252
Score = 111 bits (278), Expect = 1e-23
Identities = 53/90 (58%), Positives = 70/90 (76%)
Frame = -1
Query: 748 RKTMEAVKKQSRGSDDGKAAHSEEIRAMEEDTTKLRAEINRLESELKSKTKEVDGAEANV 569
RKTME KKQ+RG +DGK EE++A+ E+ L+A+I LESE +SK KE+ GA+
Sbjct: 118 RKTMETAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGET 177
Query: 568 SALRKQSEGFLLEYDRLLEENQNLRNELQS 479
ALRKQ++GFL+EYDRLLE+NQNLRN+L+S
Sbjct: 178 EALRKQADGFLMEYDRLLEDNQNLRNQLES 207
>gb|AAM62748.1| unknown [Arabidopsis thaliana]
Length = 218
Score = 111 bits (277), Expect = 1e-23
Identities = 53/90 (58%), Positives = 70/90 (76%)
Frame = -1
Query: 748 RKTMEAVKKQSRGSDDGKAAHSEEIRAMEEDTTKLRAEINRLESELKSKTKEVDGAEANV 569
RKTME KKQ+RG +DGK EE++A+ E+ L+A+I LESE +SK KE+ GA+
Sbjct: 118 RKTMETAKKQNRGFEDGKTTSGEEVKALGEEIAALKAKIKTLESESESKGKELKGAQGET 177
Query: 568 SALRKQSEGFLLEYDRLLEENQNLRNELQS 479
ALRKQS+GFL+EYDRLLE+N+NLRN+L+S
Sbjct: 178 EALRKQSDGFLMEYDRLLEDNRNLRNQLES 207
>gb|AAM98189.1| unknown protein [Arabidopsis thaliana]
Length = 221
Score = 92.4 bits (228), Expect = 6e-18
Identities = 47/103 (45%), Positives = 72/103 (69%)
Frame = -1
Query: 748 RKTMEAVKKQSRGSDDGKAAHSEEIRAMEEDTTKLRAEINRLESELKSKTKEVDGAEANV 569
RK ME +KK+ + KA +E++ + E+ T LR +L+SEL++++KE+ + +
Sbjct: 118 RKNMEVIKKEGALLEGVKARGLDEVKNLMEEITSLRKRQEQLDSELEARSKEIRTEKTSA 177
Query: 568 SALRKQSEGFLLEYDRLLEENQNLRNELQSWDRRLSHSGSKKN 440
AL+KQSEGFL+E++RLLEENQ LR++L + D +LS S SKKN
Sbjct: 178 VALQKQSEGFLIEFNRLLEENQVLRDQLHTVDSKLSRSSSKKN 220
>gb|AAO37960.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 217
Score = 67.0 bits (162), Expect = 3e-10
Identities = 35/88 (39%), Positives = 60/88 (67%)
Frame = -1
Query: 748 RKTMEAVKKQSRGSDDGKAAHSEEIRAMEEDTTKLRAEINRLESELKSKTKEVDGAEANV 569
R+ +E ++ ++R + + S EI+ + ++ KL + +L+SE + ++V AEA+V
Sbjct: 126 REEVEKLQMENRLFREKEEKSSSEIKKLHQEIAKLNESMKKLKSESEDHERKVLEAEAHV 185
Query: 568 SALRKQSEGFLLEYDRLLEENQNLRNEL 485
+AL+KQSE LLEYDRLLE+NQ L+++L
Sbjct: 186 NALQKQSEELLLEYDRLLEDNQILQSQL 213
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 578,699,412
Number of Sequences: 1393205
Number of extensions: 11827637
Number of successful extensions: 35386
Number of sequences better than 10.0: 619
Number of HSP's better than 10.0 without gapping: 32514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35200
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
