Miyakogusa Predicted Gene

chr1.CM0760.80.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0760
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PM40_VITVI 782 64.2 79.4 (tr|A7PM40) Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020673001 PE=4 SV=1
TAIR_pep AT5G14520.1 724 61.0 76.1 | Symbols: | pescadillo-related | chr5:4680792-4684333 REVERSE
Medicago IMGA|AC125368_17.5 957 77.6 87.3 BRCT; Pescadillo, N-terminal chr07_pseudomolecule_IMGAG_V2 26150266-26146140 F EGN_Mt071002 20080227
Soybean Glyma19g42070.1 978 79.3 87.4  
Lotus Consensus KMC008479A_C01 343 94.6 94.6 KMC008479A_c01
3' Unigene KMC008479A_C01 561 93.6 93.6 KMC008479A_c01
5' Unigene AV410490 448 96.4 96.4 MWL073f12_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0760.80.nc length: 604 aa.
IPR001357 BRCT
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
HMMPfam PF00533 BRCT 1.3e-09 342-419
HMMSmart SM00292 no description 8e-06 344-422
ProfileScan PS50172 BRCT 13.757 342-432
IPR010613 Pescadillo, N-terminal
Cellular Component GO:0005730 nucleolus    
Biological Process GO:0008283 cell proliferation    
HMMPfam PF06732 Pescadillo_N 1e-134 8-286
no_ID  
Coil coil coiled-coil NA 75-105
HMMPanther PTHR12221 PESCADILLO 1.3e-144 4-602
Seg seg seg NA 562-575
superfamily SSF52113 BRCT 1.1e-15 310-444
superfamily SSF82057 GW 1.2e-05 162-212
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0760.80.nc 604 0.046 0.522 0.041 0.616 _ 5
Wolf-PSORT
chr1.CM0760.80.nc	chlo 9, mito 3, nucl 1, cyto 1, cyto_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0760.80.nc Not targeted -39.585 -2.751 -13.386 52.40% -23.447