Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC008479A_C01 KMC008479A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196956.1| pescadillo - like protein; protein id: At5g1452... 49 3e-05
gb|AAO38454.1| pescadillo-like protein [Oryza sativa (japonica c... 46 2e-04
pir||T14283 embryogenic callus protein 85 - carrot (fragment) gi... 45 5e-04
ref|NP_085285.1| transcriptional activator [Shigella flexneri] g... 32 3.1
pir||A43859 partitioning protein ipaR - Shigella dysenteriae 32 3.1
>ref|NP_196956.1| pescadillo - like protein; protein id: At5g14520.1 [Arabidopsis
thaliana] gi|11281885|pir||T48625 pescadillo-like
protein - Arabidopsis thaliana
gi|7573301|emb|CAB87619.1| pescadillo-like protein
[Arabidopsis thaliana]
Length = 590
Score = 48.9 bits (115), Expect = 3e-05
Identities = 26/62 (41%), Positives = 41/62 (65%)
Frame = -3
Query: 473 GDPTVEPATQVQENVDDTADMSKLMMSRKKRKLLEAMQISY*RQPDPTALFKPRRKRLDE 294
G+ +V A Q+ + + ADM K++MSRKKRKL +AM+IS R+ + + R+KRL++
Sbjct: 529 GEESVPDAMQIAQ---EDADMPKVLMSRKKRKLYDAMKISQSRKRSGVEIIEQRKKRLND 585
Query: 293 AQ 288
Q
Sbjct: 586 TQ 587
>gb|AAO38454.1| pescadillo-like protein [Oryza sativa (japonica cultivar-group)]
Length = 604
Score = 46.2 bits (108), Expect = 2e-04
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = -3
Query: 491 EKETSGGDPTVEPATQVQENVDDTADMSKLMMSRKKRKLLEAMQISY*RQPDPTALFKPR 312
+ +T D +E + + E D AD+SK +MSRK+R LL+A++I+ R+ D L K R
Sbjct: 534 KSDTKEADDHMEDSHKQAEK--DAADISKTLMSRKQRGLLQAIEINQERKKDKVNLLKKR 591
Query: 311 RKRLDEAQS*K 279
+K D + S K
Sbjct: 592 KKNADSSASAK 602
>pir||T14283 embryogenic callus protein 85 - carrot (fragment)
gi|3551251|dbj|BAA32824.1| 85 [Daucus carota]
Length = 117
Score = 45.1 bits (105), Expect = 5e-04
Identities = 28/71 (39%), Positives = 42/71 (58%), Gaps = 2/71 (2%)
Frame = -3
Query: 494 VEKETSGGDP--TVEPATQVQENVDDTADMSKLMMSRKKRKLLEAMQISY*RQPDPTALF 321
VE + S P T A ++ + D AD++ + +SRKKR+L +AMQI R+ T L
Sbjct: 43 VESDASDKKPVDTGFIAADSEQAIKDAADITMVGVSRKKRELYKAMQIGNERKKAKTQLL 102
Query: 320 KPRRKRLDEAQ 288
K R++ LDEA+
Sbjct: 103 KERKRLLDEAK 113
>ref|NP_085285.1| transcriptional activator [Shigella flexneri]
gi|138582|sp|P11656|VIRB_SHIFL Virulence regulon
transcriptional activator VIRB (Cell invasion regulator
INVE) gi|79188|pir||S04379 partitioning protein virB -
Shigella flexneri plasmid gi|2126195|pir||S69201
partitioning protein invE - Shigella sonnei
gi|47065|emb|CAA32525.1| virB transcriptional activator
(AA 1 - 309) [Shigella flexneri]
gi|152739|gb|AAA26520.1| cell invasion regulator (invE)
gi|12329067|emb|CAC05798.1| VirB, transcriptional
activator required for tanscription of the ipa, mxi, and
spa operons [Shigella flexneri]
gi|13310617|gb|AAK18441.1|AF348706_130 transcriptional
activator [Shigella flexneri]
gi|14571877|gb|AAK67304.1|AF283289_1 VirB [Escherichia
coli] gi|14571879|gb|AAK67305.1|AF283290_1 VirB
[Escherichia coli] gi|18462523|gb|AAL72295.1| VirB
[Shigella flexneri 2a]
Length = 309
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Frame = +3
Query: 60 VFLHSLVDLTSKSGEQAKNPSLNSENVKTPEGLR---KHTSNKTERTRV*LSSKSAATIQ 230
++ ++++ KS + +NPSL +++ + R K NKT RT + SK T+Q
Sbjct: 232 IYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTNRTLIFTLSKINKTVQ 291
Query: 231 NEV 239
E+
Sbjct: 292 REI 294
>pir||A43859 partitioning protein ipaR - Shigella dysenteriae
Length = 309
Score = 32.3 bits (72), Expect = 3.1
Identities = 18/63 (28%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Frame = +3
Query: 60 VFLHSLVDLTSKSGEQAKNPSLNSENVKTPEGLR---KHTSNKTERTRV*LSSKSAATIQ 230
++ ++++ KS + +NPSL +++ + R K NKT RT + SK T+Q
Sbjct: 232 IYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTNRTLIFTLSKINKTVQ 291
Query: 231 NEV 239
E+
Sbjct: 292 REI 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,880,565
Number of Sequences: 1393205
Number of extensions: 7369741
Number of successful extensions: 16476
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16471
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
