Miyakogusa Predicted Gene

chr1.CM0591.620.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0591
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P260_VITVI 609 74.4 83.9 (tr|A7P260) Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027891001 PE=4 SV=1
TAIR_pep AT5G16880.2 520 68.7 79.3 | Symbols: | VHS domain-containing protein / GAT domain-containing protein | chr5:5549661-5551277 FORWARD
Medicago IMGA|CT027663_23.5 611 80.4 85.1 GAT; ENTH/VHS chr05_pseudomolecule_IMGAG_V2 1158167-1154103 F EGN_Mt071002 20080227
Soybean Glyma01g44290.1 639 80.8 87.1  
Lotus Consensus KMC005390A_C01 1126 99.8 99.8 KMC005390A_c01
3' Unigene KMC005390A_C01 1074 99.6 99.6 KMC005390A_c01
5' Unigene R_KMC000390A_C01 1098 100.0 100.0 R_KMC000390A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0591.620.nd length: 401 aa.
IPR002014 VHS
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
BlastProDom PD003686 Q9LFL3_ARATH_Q9LFL3; 2e-55 55-181
HMMPfam PF00790 VHS 9.8e-27 44-181
HMMSmart SM00288 no description 6.6e-33 50-181
ProfileScan PS50179 VHS 38.473 57-185
IPR004152 GAT
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006886 intracellular protein transport    
HMMPfam PF03127 GAT 2.1e-05 268-313
ProfileScan PS50909 GAT 15.721 228-315
no_ID  
Gene3D 1.20.58.160 no description 0.00015 229-330
Gene3D 1.25.40.90 no description 7.2e-39 48-185
HMMPanther PTHR13856 VHS 3e-74 58-330
HMMPanther PTHR13856:SF27 TARGET 3e-74 58-330
Seg seg seg NA 198-220
superfamily SSF48464 ENTH/VHS 4.9e-46 48-192
superfamily SSF89009 GAT 1.9e-26 193-316
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0591.620.nd 401 0.201 0.077 0.116 0.864 _ 2
Wolf-PSORT
chr1.CM0591.620.nd	cyto 8, nucl 2, pero 2, chlo 1, mito 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0591.620.nd Not targeted -34.781 0 -11.116 41.18% -23.665