Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005390A_C01 KMC005390A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197190.1| TOM (target of myb1) -like protein; protein id:... 296 2e-79
gb|AAL58181.1|AC027037_3 hepatocyte growth factor-regulated tyro... 293 9e-79
ref|NP_563762.1| expressed protein; protein id: At1g06210.1, sup... 146 2e-34
gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|231976... 104 1e-21
dbj|BAB61260.1| P0439E11.10 [Oryza sativa (japonica cultivar-gro... 103 2e-21
>ref|NP_197190.1| TOM (target of myb1) -like protein; protein id: At5g16880.1,
supported by cDNA: 1330., supported by cDNA:
gi_15983760, supported by cDNA: gi_17065127 [Arabidopsis
thaliana] gi|11358881|pir||T51543 TOM (target of
myb1)-like protein - Arabidopsis thaliana
gi|9755689|emb|CAC01701.1| TOM (target of myb1)-like
protein [Arabidopsis thaliana]
gi|15983761|gb|AAL10477.1| AT5g16880/F2K13_30
[Arabidopsis thaliana] gi|17065128|gb|AAL32718.1| TOM
(target of myb1)-like protein [Arabidopsis thaliana]
gi|21537352|gb|AAM61693.1| TOM (target of myb1)-like
protein [Arabidopsis thaliana]
gi|27311895|gb|AAO00913.1| TOM (target of myb1)-like
protein [Arabidopsis thaliana]
Length = 407
Score = 296 bits (757), Expect = 2e-79
Identities = 145/187 (77%), Positives = 166/187 (88%)
Frame = +2
Query: 53 SLMEKVNALSERLKISGTEVGRKMTAGMTSMSFKVKEFFQGGPNQVDKLVEDATSEALDE 232
+LM+KV A ERLKI G+EV K++AG++SMSFKVKE FQG PN DK+VEDAT+E L+E
Sbjct: 4 NLMDKVTAFGERLKIGGSEVSNKISAGVSSMSFKVKELFQG-PNPTDKIVEDATTENLEE 62
Query: 233 PDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVLLETCVKNCEKAFSEV 412
PDW NL +CD+IN + +NS++LIR IKKRIM K PR+QYLALVLLETCVKNCEKAFSEV
Sbjct: 63 PDWDMNLEICDMINQETINSVELIRGIKKRIMMKQPRIQYLALVLLETCVKNCEKAFSEV 122
Query: 413 AAERVLDEMVRLIDDPHTVVNNRNKALIMIEAWGESTGELRYLPVFEETYKSLKSRGIRF 592
AAERVLDEMV+LIDDP TVVNNRNKAL++IEAWGEST ELRYLPVFEETYKSLK+RGIRF
Sbjct: 123 AAERVLDEMVKLIDDPQTVVNNRNKALMLIEAWGESTSELRYLPVFEETYKSLKARGIRF 182
Query: 593 PGRDNES 613
PGRDNES
Sbjct: 183 PGRDNES 189
>gb|AAL58181.1|AC027037_3 hepatocyte growth factor-regulated tyrosine kinase substrate-like
protein [Oryza sativa]
Length = 387
Score = 293 bits (751), Expect = 9e-79
Identities = 144/187 (77%), Positives = 169/187 (90%)
Frame = +2
Query: 53 SLMEKVNALSERLKISGTEVGRKMTAGMTSMSFKVKEFFQGGPNQVDKLVEDATSEALDE 232
+LM+KVNAL ERLK+SG EV RKM+AG+++MSFK+KEFFQG N DK+V++AT E +D
Sbjct: 4 NLMDKVNALGERLKVSGAEVSRKMSAGVSNMSFKMKEFFQG-QNMADKIVDEATLETMDA 62
Query: 233 PDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVLLETCVKNCEKAFSEV 412
PDWATNL +CD++NT VNSI+LIRAIK+RIM K+PRVQYLALVLLET VKNCEKAFSE+
Sbjct: 63 PDWATNLEICDMVNTGNVNSIELIRAIKRRIMLKNPRVQYLALVLLETVVKNCEKAFSEI 122
Query: 413 AAERVLDEMVRLIDDPHTVVNNRNKALIMIEAWGESTGELRYLPVFEETYKSLKSRGIRF 592
AAERVLDEMV+LIDDP TVVNNRNKAL++IEAWGES ELRYLPV+EETYKSL+SRGIRF
Sbjct: 123 AAERVLDEMVKLIDDPQTVVNNRNKALMLIEAWGESGDELRYLPVYEETYKSLRSRGIRF 182
Query: 593 PGRDNES 613
PGRD+ES
Sbjct: 183 PGRDDES 189
>ref|NP_563762.1| expressed protein; protein id: At1g06210.1, supported by cDNA:
gi_15450710 [Arabidopsis thaliana]
gi|25406904|pir||G86197 hypothetical protein [imported]
- Arabidopsis thaliana
gi|8844126|gb|AAF80218.1|AC025290_7 Contains similarity
to an ADP-ribosylation factor binding protein GGA1 from
Homo sapiens gb|AF190862 and contains a VHS PF|00790
domain. EST gb|BE037588 comes from this gene.
[Arabidopsis thaliana] gi|15450711|gb|AAK96627.1|
At1g06210/F9P14_4 [Arabidopsis thaliana]
gi|23308355|gb|AAN18147.1| At1g06210/F9P14_4
[Arabidopsis thaliana]
Length = 383
Score = 146 bits (369), Expect = 2e-34
Identities = 81/182 (44%), Positives = 112/182 (61%), Gaps = 1/182 (0%)
Frame = +2
Query: 65 KVNALSERLKISGTEVGRKMTAGMTSMSFKVKEFFQGGPNQVDKLVEDATSEALDEPDWA 244
K+ E+LK G ++ R + S KVK+ Q P K+V++AT E L+EP+W
Sbjct: 5 KIAEWGEKLKTGGAQMSRMV-------SEKVKDMLQA-PTLESKMVDEATLETLEEPNWG 56
Query: 245 TNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVLLETCVKNCEKAFSEVAAER 424
N+ +C IN D+ N +++RAIK++I KSP Q L+L LLE C NCEK FSEVA+E+
Sbjct: 57 MNMRICAQINNDEFNGTEIVRAIKRKISGKSPVSQRLSLELLEACAMNCEKVFSEVASEK 116
Query: 425 VLDEMVRLIDDPHTVVNNRNKALIMIEAWGESTGELRYLPVFEETYKSLK-SRGIRFPGR 601
VLDEMV LI + NR +A +I AWG+S +L YLPVF +TY SL+ G+ G
Sbjct: 117 VLDEMVWLIKNGEADSENRKRAFQLIRAWGQSQ-DLTYLPVFHQTYMSLEGENGLHARGE 175
Query: 602 DN 607
+N
Sbjct: 176 EN 177
>gb|AAM53282.1| putative protein [Arabidopsis thaliana] gi|23197650|gb|AAN15352.1|
putative protein [Arabidopsis thaliana]
Length = 675
Score = 104 bits (259), Expect = 1e-21
Identities = 62/148 (41%), Positives = 87/148 (57%), Gaps = 6/148 (4%)
Frame = +2
Query: 188 VDKLVEDATSEALDEPDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQYLALVL 367
V+ +VE ATSE L PDWA NL +CD++N+D + D+++ IKKRI ++P+ Q LAL L
Sbjct: 2 VNAMVERATSEMLIGPDWAMNLEICDMLNSDPAQAKDVVKGIKKRIGSRNPKAQLLALTL 61
Query: 368 LETCVKNC-EKAFSEVAAERVLDEMVRLI---DDPHTVVNNRNKALIMIEAWGESTG--E 529
LET VKNC + VA + V+ EMVR++ D H + K L++I+ W E+ G
Sbjct: 62 LETIVKNCGDMVHMHVAEKGVIHEMVRIVKKKPDFHV----KEKILVLIDTWQEAFGGPR 117
Query: 530 LRYLPVFEETYKSLKSRGIRFPGRDNES 613
RY P + Y+ L G FP R S
Sbjct: 118 ARY-PQYYAGYQELLRAGAVFPQRSERS 144
>dbj|BAB61260.1| P0439E11.10 [Oryza sativa (japonica cultivar-group)]
Length = 431
Score = 103 bits (257), Expect = 2e-21
Identities = 53/119 (44%), Positives = 79/119 (65%), Gaps = 1/119 (0%)
Frame = +2
Query: 173 GGPNQVDKLVEDATSEALDEPDWATNLHLCDLINTDKVNSIDLIRAIKKRIMDKSPRVQY 352
G P + VE ATS L PDWA NL +CD+IN D + D+++A+KKR+ +K P+VQ+
Sbjct: 13 GAPARAAPRVEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVKKRLQNKDPKVQF 72
Query: 353 LALVLLETCVKNC-EKAFSEVAAERVLDEMVRLIDDPHTVVNNRNKALIMIEAWGESTG 526
AL LLET +KNC E EVA + VL EMV++I + ++ R+K L+++++W E+ G
Sbjct: 73 YALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDML-VRDKILLLLDSWQEAFG 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,836,665
Number of Sequences: 1393205
Number of extensions: 12745144
Number of successful extensions: 85015
Number of sequences better than 10.0: 1351
Number of HSP's better than 10.0 without gapping: 63139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79904
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
