Miyakogusa Predicted Gene

chr1.CM0375.440.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0375
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q8VWI2_MAIZE 641 79.1 89.9 (tr|Q8VWI2) Histone acetyltransferase (GCN5 protein) OS=Zea mays GN=GCN5 PE=2 SV=1
TAIR_pep AT3G54610.1 686 64.8 75.2 | Symbols: HAG1, HAT1, ATGCN5, HAC3, HAG01, BGT, GCN5 | GCN5 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 1); H3 histone acetyltransferase | chr3:20224571-20228353 FORWARD
Medicago IMGA|AC183923_8.4 70.1 39.8 57.0 Bromodomain chr02_pseudomolecule_IMGAG_V2 5678377-5673610 E EGN_Mt071002 20080227
Soybean Glyma03g31490.1 887 79.8 83.3  
3' Unigene BP048192 341 100.0 100.0 SPD052h09_f
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0375.440.nc length: 540 aa.
IPR000182 GCN5-related N-acetyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0008080 N-acetyltransferase activity    
HMMPfam PF00583 Acetyltransf_1 3.1e-11 239-317
IPR001487 Bromodomain
FPrintScan PR00503 BROMODOMAIN 9.3e-17 447-460
461-477
496-515
HMMPfam PF00439 Bromodomain 4.5e-34 432-520
HMMSmart SM00297 no description 9e-41 425-534
ProfileScan PS50014 BROMODOMAIN_2 21.579 444-515
ScanRegExp PS00633 BROMODOMAIN_1 NA 449-507
no_ID  
Gene3D 1.20.920.10 no description 1.5e-32 408-531
Gene3D 3.40.630.30 no description 4.4e-67 192-350
HMMPanther PTHR22880 FALZ-RELATED 7.4e-192 184-530
HMMPanther PTHR22880:SF6 HISTONE 7.4e-192 184-530
Seg seg seg NA 11-30
73-98
139-158
superfamily SSF47370 Bromodomain 1.3e-33 406-535
superfamily SSF55729 Acyl-CoA 4.4e-27 206-350
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0375.440.nc 540 0.906 0.236 0.006 0.046 C 2
Wolf-PSORT
chr1.CM0375.440.nc	chlo 8, nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0375.440.nc Not targeted -45.971 -0.131 -4.934 66.59% -40.906