Miyakogusa Predicted Gene

chr1.CM0371.130.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0371
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A8DS92_POPTM 834 91.7 94.0 (tr|A8DS92) Alpha-tubulin 6 OS=Populus tremuloides PE=2 SV=1
TAIR_pep AT5G19780.1 830 90.3 94.7 | Symbols: TUA5 | TUA5 (tubulin alpha-5) | chr5:6687214-6688928 FORWARD
Medicago IMGA|AC170580_1.4 832 91.2 94.7 Tubulin/FtsZ, C-terminal chr07_pseudomolecule_IMGAG_V2 22432548-22435837 E EGN_Mt071002 20080227
Soybean Glyma19g28990.1 840 92.4 94.9  
Lotus Consensus KMC014712A_C01 450 100.0 100.0 KMC014712A_c01
3' Unigene KMC014712A_C01 997 99.8 99.8 KMC014712A_c01
5' Unigene AV407054 492 99.6 99.6 MWL014c10_r
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0371.130.nc length: 449 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005198 structural molecule activity    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007018 microtubule-based movement    
FPrintScan PR01161 TUBULIN 9.2e-90 10-30
53-72
95-106
108-132
134-152
153-174
178-191
192-212
380-408
HMMPanther PTHR11588 TUBULIN 6.5e-233 130-449
ScanRegExp PS00227 TUBULIN NA 142-148
IPR002452 Alpha tubulin
Molecular Function GO:0005198 structural molecule activity    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007018 microtubule-based movement    
FPrintScan PR01162 ALPHATUBULIN 3.5e-115 18-33
45-58
88-101
120-128
148-160
161-172
214-226
274-289
321-342
347-360
360-379
385-401
422-438
HMMPanther PTHR11588:SF10 TUBULIN 6.5e-233 130-449
IPR003008 Tubulin/FtsZ, GTPase
HMMPfam PF00091 Tubulin 2.2e-98 49-246
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
HMMPfam PF03953 Tubulin_C 7.1e-77 248-393
no_ID  
Coil coil coiled-coil NA 418-446
Gene3D 1.10.287.600 no description 3.6e-21 384-440
Gene3D 3.30.1330.20 no description 8.8e-49 269-383
Gene3D 3.40.50.1440 no description 1.8e-118 1-267
Seg seg seg NA 142-158
433-448
superfamily SSF52490 Tubulin/Dihydroxyacetone 2.7e-96 1-245
superfamily SSF55307 Tubulin/Dihydroxyacetone 3.2e-88 246-440
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0371.130.nc 449 0.084 0.103 0.284 0.694 _ 3
Wolf-PSORT
chr1.CM0371.130.nc	cyto 10, cysk 2, chlo 1, nucl 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0371.130.nc Not targeted -77.913 0 -37.938 98.47% -39.975