Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014712A_C01 KMC014712A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197478.1| tubulin alpha-5 chain-like protein; protein id:... 138 5e-32
gb|AAD50629.1|AF106571_1 alpha-tubulin [Gossypium hirsutum] 137 6e-32
ref|NP_176654.1| alpha-tubulin, putative; protein id: At1g64740.... 137 1e-31
prf||1503274A alpha1 tubulin 137 1e-31
sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain gi|421781|pir||S32666... 137 1e-31
>ref|NP_197478.1| tubulin alpha-5 chain-like protein; protein id: At5g19770.1,
supported by cDNA: gi_13605804, supported by cDNA:
gi_17473825 [Arabidopsis thaliana]
gi|15241179|ref|NP_197479.1| tubulin alpha-5 chain;
protein id: At5g19780.1, supported by cDNA: gi_14532775,
supported by cDNA: gi_19310732 [Arabidopsis thaliana]
gi|135406|sp|P20363|TBA3_ARATH Tubulin alpha-3/alpha-5
chain gi|99768|pir||A32712 tubulin alpha-5 chain -
Arabidopsis thaliana gi|166912|gb|AAA32888.1|
alpha-tubulin gi|166918|gb|AAA32891.1| alpha-5 tubulin
gi|13605805|gb|AAK32888.1|AF367301_1
AT5g19770/T29J13_190 [Arabidopsis thaliana]
gi|14532776|gb|AAK64169.1| putative tubulin alpha-5
chain [Arabidopsis thaliana] gi|17473826|gb|AAL38340.1|
unknown protein [Arabidopsis thaliana]
gi|19310733|gb|AAL85097.1| putative tubulin alpha-5
chain [Arabidopsis thaliana] gi|23397154|gb|AAN31860.1|
putative tubulin alpha-5 chain [Arabidopsis thaliana]
gi|23397156|gb|AAN31861.1| putative tubulin alpha-5
chain [Arabidopsis thaliana] gi|23505949|gb|AAN28834.1|
At5g19770/T29J13_190 [Arabidopsis thaliana]
gi|24899739|gb|AAN65084.1| unknown protein [Arabidopsis
thaliana]
Length = 450
Score = 138 bits (347), Expect = 5e-32
Identities = 66/71 (92%), Positives = 69/71 (96%)
Frame = -3
Query: 544 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 365
CMISNNTAVAEVFSRID+KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 364 GAEGEEGEEDE 332
GAEG + EEDE
Sbjct: 436 GAEGGDDEEDE 446
>gb|AAD50629.1|AF106571_1 alpha-tubulin [Gossypium hirsutum]
Length = 126
Score = 137 bits (346), Expect = 6e-32
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = -3
Query: 544 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 365
CMISNNTAVAEVF+RID+KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 53 CMISNNTAVAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 112
Query: 364 GAEGEEGEEDEEGY 323
GAEG + EE+ E Y
Sbjct: 113 GAEGGDDEEEGEEY 126
>ref|NP_176654.1| alpha-tubulin, putative; protein id: At1g64740.1, supported by
cDNA: gi_16604566, supported by cDNA: gi_20259190
[Arabidopsis thaliana] gi|135391|sp|P11139|TBA1_ARATH
Tubulin alpha-1 chain gi|71583|pir||UBMUAM tubulin
alpha-1 chain - Arabidopsis thaliana
gi|166896|gb|AAA32880.1| alpha-1-tubulin
gi|5042410|gb|AAD38249.1|AC006193_5 alpha1 tubulin
[Arabidopsis thaliana] gi|16604567|gb|AAL24085.1|
putative alpha-tubulin protein [Arabidopsis thaliana]
gi|20259191|gb|AAM14311.1| putative alpha-tubulin
protein [Arabidopsis thaliana]
Length = 450
Score = 137 bits (344), Expect = 1e-31
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3
Query: 544 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 365
CMISNNTAVAEVFSRID+KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 364 GAEGEEGEEDEEG 326
G EG E ++DEEG
Sbjct: 436 GGEGAE-DDDEEG 447
>prf||1503274A alpha1 tubulin
Length = 450
Score = 137 bits (344), Expect = 1e-31
Identities = 67/73 (91%), Positives = 70/73 (95%)
Frame = -3
Query: 544 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 365
CMISNNTAVAEVFSRID+KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 376 CMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 364 GAEGEEGEEDEEG 326
G EG E ++DEEG
Sbjct: 436 GGEGAE-DDDEEG 447
>sp|P33623|TBA1_ANEPH Tubulin alpha-1 chain gi|421781|pir||S32666 tubulin alpha-1 chain -
fern (Anemia phyllitidis) gi|296494|emb|CAA48927.1|
alpha tubulin [Anemia phyllitidis]
Length = 451
Score = 137 bits (344), Expect = 1e-31
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = -3
Query: 544 CMISNNTAVAEVFSRIDYKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 365
CMISN+T+VAEVFSRID+KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV
Sbjct: 376 CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 435
Query: 364 GAEGEEGEEDEEG 326
GAE EGEE +EG
Sbjct: 436 GAESGEGEEGDEG 448
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,512,221
Number of Sequences: 1393205
Number of extensions: 10238726
Number of successful extensions: 52007
Number of sequences better than 10.0: 1323
Number of HSP's better than 10.0 without gapping: 41163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49856
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
