Miyakogusa Predicted Gene

chr1.CM0295.260.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0295
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B5U8K6_LOTJA 836 87.9 93.4 (tr|B5U8K6) Legumin storage protein 5 OS=Lotus japonicus GN=llp5 PE=2 SV=1
TAIR_pep AT5G44120.3 344 42.9 60.3 | Symbols: ATCRA1, CRU1, CRA1 | CRA1 (CRUCIFERINA); nutrient reservoir | chr5:17773687-17775473 REVERSE
Medicago IMGA|AC158374_4.5 268 34.0 49.8 Cupin region chr01_pseudomolecule_IMGAG_V2 16366157-16368386 F EGN_Mt071002 20080227
Soybean Glyma19g34780.1 615 65.4 78.3  
3' Unigene BP064555 69.9 90.2 90.2 GENLf042d04
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0295.260.nd length: 475 aa.
IPR006044 11-S plant seed storage protein
method AccNumber shortName E-value location
Molecular Function GO:0045735 nutrient reservoir activity    
FPrintScan PR00439 11SGLOBULIN 1.1e-50 301-318
324-344
346-366
370-386
388-403
406-424
428-445
ScanRegExp PS00305 11S_SEED_STORAGE 8e-5 289-311
IPR006045 Cupin 1
Molecular Function GO:0045735 nutrient reservoir activity    
HMMPfam PF00190 Cupin_1 4e-44 37-187
302-451
IPR011051 Cupin, RmlC-type
superfamily SSF51182 RmlC-like 5.8e-80 4-457
no_ID  
Gene3D 2.60.120.10 no description 1.3e-50 25-304
305-474
ProfileScan PS50849 CUPIN 8.593 346-403
Seg seg seg NA 4-20
24-29
267-275
Putative transmembrane regions
  From To
TM segments
SOSUI		 3 23
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0295.260.nd 475 0.004 0.155 0.964 0.006 S 1
Wolf-PSORT
chr1.CM0295.260.nd	vacu 7, extr 3, golg 2, nucl 1, E.R. 1, golg_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0295.260.nd Not targeted -18.616 0 -2.691 11.18% -15.925