Miyakogusa Predicted Gene

chr1.CM0105.1090.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0105
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5C673_VITVI 603 84.3 88.9 (tr|A5C673) Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00034005001 PE=3 SV=1
TAIR_pep AT1G53900.1 600 76.3 84.8 | Symbols: | GTP binding / translation initiation factor | chr1:20131302-20134502 FORWARD
Medicago IMGA|AC183502_34.4 448 94.4 97.0 Initiation factor 2B related chr08_pseudomolecule_IMGAG_V2 6950479-6948216 E EGN_Mt071002 20080227
Soybean Glyma03g42430.1 641 82.9 86.8  
Lotus Consensus KMC007315A_C01 791 100.0 100.0 KMC007315A_c01
3' Unigene KMC007315A_C01 684 100.0 100.0 KMC007315A_c01
5' Unigene R_KMC001627A_C01 147 88.0 88.0 R_KMC001627A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0105.1090.nc length: 381 aa.
IPR000649 Initiation factor 2B related
method AccNumber shortName E-value location
Biological Process GO:0044237 cellular metabolism    
HMMPanther PTHR10233 TRANSLATION 2.1e-145 82-381
HMMPfam PF01008 IF-2B 2e-62 92-371
no_ID  
Gene3D 3.40.50.10470 no description 1.4e-53 187-369
HMMPanther PTHR10233:SF7 TRANSLATION 2.1e-145 82-381
Seg seg seg NA 97-112
superfamily SSF52512 Phosphosugar 6.1e-12 182-334
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0105.1090.nc 381 0.072 0.489 0.039 0.705 _ 4
Wolf-PSORT
chr1.CM0105.1090.nc	cyto 8, chlo 2, nucl 2, cysk_nucl 1.83333, nucl_plas 1.83333
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0105.1090.nc Not targeted -20.533 -1.369 -6.594 13.68% -12.570