Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC007315A_C01 KMC007315A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96579 hypothetical protein T18A20.13 [imported] - Arabidop... 248 4e-65
ref|NP_564643.1| unknown protein; protein id: At1g53880.1 [Arabi... 248 4e-65
pir||C96747 hypothetical protein T10D10.19 [imported] - Arabidop... 247 7e-65
ref|NP_565041.1| putative translation initiation factor EIF-2B a... 247 7e-65
ref|NP_742026.1| translation initiation factor eIF-2B alpha-subu... 141 4e-33
>pir||C96579 hypothetical protein T18A20.13 [imported] - Arabidopsis thaliana
gi|6056396|gb|AAF02860.1|AC009324_9 Similar to
initiation factor 2 subunit [Arabidopsis thaliana]
gi|6056397|gb|AAF02861.1|AC009324_10 Similar to
initiation factor 2 subunit [Arabidopsis thaliana]
Length = 351
Score = 248 bits (632), Expect = 4e-65
Identities = 124/132 (93%), Positives = 128/132 (96%)
Frame = -1
Query: 535 LDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 356
LD+PVKL+IDSAVAY+MDEVDMVFVGADGVVESGGIINMMGTYQIALVA SMNKPVYVAA
Sbjct: 220 LDIPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAQSMNKPVYVAA 279
Query: 355 ESYKFARLYPLDQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTP 176
ESYKFARLYPLDQKDL PALRPIDF VP+P KVEVERSARDYTPPQYLTLLFTDLGVLTP
Sbjct: 280 ESYKFARLYPLDQKDLEPALRPIDFSVPVPPKVEVERSARDYTPPQYLTLLFTDLGVLTP 339
Query: 175 SVVSDELIQLYL 140
SVVSDELIQLYL
Sbjct: 340 SVVSDELIQLYL 351
>ref|NP_564643.1| unknown protein; protein id: At1g53880.1 [Arabidopsis thaliana]
gi|18404692|ref|NP_564646.1| unknown protein; protein
id: At1g53900.1 [Arabidopsis thaliana]
Length = 637
Score = 248 bits (632), Expect = 4e-65
Identities = 124/132 (93%), Positives = 128/132 (96%)
Frame = -1
Query: 535 LDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 356
LD+PVKL+IDSAVAY+MDEVDMVFVGADGVVESGGIINMMGTYQIALVA SMNKPVYVAA
Sbjct: 506 LDIPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAQSMNKPVYVAA 565
Query: 355 ESYKFARLYPLDQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTP 176
ESYKFARLYPLDQKDL PALRPIDF VP+P KVEVERSARDYTPPQYLTLLFTDLGVLTP
Sbjct: 566 ESYKFARLYPLDQKDLEPALRPIDFSVPVPPKVEVERSARDYTPPQYLTLLFTDLGVLTP 625
Query: 175 SVVSDELIQLYL 140
SVVSDELIQLYL
Sbjct: 626 SVVSDELIQLYL 637
>pir||C96747 hypothetical protein T10D10.19 [imported] - Arabidopsis thaliana
gi|12325267|gb|AAG52574.1|AC016529_5 putative
translation initiation factor EIF-2B alpha subunit;
76271-74747 [Arabidopsis thaliana]
Length = 362
Score = 247 bits (630), Expect = 7e-65
Identities = 122/132 (92%), Positives = 131/132 (98%)
Frame = -1
Query: 535 LDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 356
LD+PVKL++DSAVAY+MDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA
Sbjct: 231 LDIPVKLLLDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 290
Query: 355 ESYKFARLYPLDQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTP 176
ESYKFARLYPLDQKD++PALRPI+FGV IP+KVEVERSARDYTPPQYLTLLFTDLGVL+P
Sbjct: 291 ESYKFARLYPLDQKDMAPALRPIEFGVKIPTKVEVERSARDYTPPQYLTLLFTDLGVLSP 350
Query: 175 SVVSDELIQLYL 140
SVVSDELIQLYL
Sbjct: 351 SVVSDELIQLYL 362
>ref|NP_565041.1| putative translation initiation factor EIF-2B alpha subunit;
protein id: At1g72340.1, supported by cDNA: 22437.,
supported by cDNA: gi_17065009 [Arabidopsis thaliana]
gi|17065010|gb|AAL32659.1| putative translation
initiation factor EIF-2B alpha subunit [Arabidopsis
thaliana] gi|21592334|gb|AAM64285.1| putative
translation initiation factor EIF-2B alpha subunit
[Arabidopsis thaliana] gi|23197852|gb|AAN15453.1|
putative translation initiation factor EIF-2B alpha
subunit [Arabidopsis thaliana]
Length = 382
Score = 247 bits (630), Expect = 7e-65
Identities = 122/132 (92%), Positives = 131/132 (98%)
Frame = -1
Query: 535 LDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 356
LD+PVKL++DSAVAY+MDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA
Sbjct: 251 LDIPVKLLLDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 310
Query: 355 ESYKFARLYPLDQKDLSPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFTDLGVLTP 176
ESYKFARLYPLDQKD++PALRPI+FGV IP+KVEVERSARDYTPPQYLTLLFTDLGVL+P
Sbjct: 311 ESYKFARLYPLDQKDMAPALRPIEFGVKIPTKVEVERSARDYTPPQYLTLLFTDLGVLSP 370
Query: 175 SVVSDELIQLYL 140
SVVSDELIQLYL
Sbjct: 371 SVVSDELIQLYL 382
>ref|NP_742026.1| translation initiation factor eIF-2B alpha-subunit [Rattus
norvegicus] gi|2494304|sp|Q64270|E2BA_RAT Translation
initiation factor eIF-2B alpha subunit (eIF-2B GDP-GTP
exchange factor) gi|2144003|pir||I59376 translation
initiation factor eIF-2B alpha chain [validated] - rat
gi|623033|gb|AAC52196.1| translation initiation factor
eIF-2B alpha-subunit gi|1050328|gb|AAA91276.1|
GTP-exchange protein gi|1096885|prf||2112359A initiation
factor eIF-2B
Length = 305
Score = 141 bits (356), Expect = 4e-33
Identities = 75/139 (53%), Positives = 100/139 (70%), Gaps = 7/139 (5%)
Frame = -1
Query: 535 LDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 356
L+VPV +V+D+AV Y M++VD+V VGA+GVVE+GGIIN +GT Q+A+ A + NKP YV A
Sbjct: 171 LNVPVTVVLDAAVGYIMEKVDLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVA 230
Query: 355 ESYKFARLYPLDQKDL-------SPALRPIDFGVPIPSKVEVERSARDYTPPQYLTLLFT 197
ES+KF RL+PL+Q+D+ + L+ + G ++ E DYT P +TLLFT
Sbjct: 231 ESFKFVRLFPLNQQDVPDKFKYKADTLKSVQAG----QDLKEEHPWVDYTSPSLITLLFT 286
Query: 196 DLGVLTPSVVSDELIQLYL 140
DLGVLTPS VSDELI+LYL
Sbjct: 287 DLGVLTPSAVSDELIKLYL 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,959,881
Number of Sequences: 1393205
Number of extensions: 10385109
Number of successful extensions: 30645
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 28454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30554
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
