Miyakogusa Predicted Gene

chr1.CM0098.420.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0098
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2HUH7_MEDTR 188 82.1 87.7 (tr|Q2HUH7) RNA-binding region RNP-1 (RNA recognition motif) OS=Medicago truncatula GN=MtrDRAFT_AC149134g13v2 PE=4 SV=1
TAIR_pep AT3G56860.2 171 75.2 84.8 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA binding | chr3:21061687-21063123 REVERSE
Medicago IMGA|AC149134_50.5 188 82.1 87.7 RNA-binding region RNP-1 (RNA recognition motif) chr07_pseudomolecule_IMGAG_V2 23568765-23563374 E EGN_Mt071002 20080227
Soybean Glyma03g27290.2 179 76.4 88.7  
Lotus Consensus KMC003626A_C01 460 100.0 100.0 KMC003626A_c01
3' Unigene KMC003626A_C01 460 100.0 100.0 KMC003626A_c01
5' Unigene R_KMC001767A_C01 379 100.0 100.0 R_KMC001767A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr1.CM0098.420.nd length: 193 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 8.9e-15 129-186
HMMSmart SM00360 no description 6.3e-11 128-193
ProfileScan PS50102 RRM 13.874 127-193
no_ID  
Coil coil coiled-coil NA 27-85
Gene3D 3.30.70.330 no description 1.1e-16 55-185
HMMPanther PTHR10432 RNA-BINDING 4.8e-41 122-187
HMMPanther PTHR10432:SF5 RNA-BINDING 4.8e-41 122-187
Seg seg seg NA 31-81
superfamily SSF54928 RNA-binding 1.1e-16 121-186
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr1.CM0098.420.nd 193 0.219 0.129 0.091 0.622 _ 3
Wolf-PSORT
chr1.CM0098.420.nd	cyto 9, nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr1.CM0098.420.nd Not targeted -50.582 -0.473 -21.144 75.48% -28.965