Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003626A_C01 KMC003626A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba] 182 2e-45
gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|201483... 163 2e-39
ref|NP_567042.1| RRM-containing RNA-binding protein; protein id:... 163 2e-39
ref|NP_181639.1| RRM-containing RNA-binding protein; protein id:... 144 8e-34
dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica ... 113 1e-24
>gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba]
Length = 515
Score = 182 bits (462), Expect = 2e-45
Identities = 102/165 (61%), Positives = 119/165 (71%), Gaps = 9/165 (5%)
Frame = +1
Query: 97 ESITKKRKLVPKSSQSAELPFKL---QNKLEAEVQEY---EEVEEE---VEEEVEEEEEE 249
+++ +KRKLV KSSQ E P K Q + + E + Y EEVEEE VEEE EE EE
Sbjct: 19 QTMVRKRKLVAKSSQPEEPPLKQHHSQPQPDPEPEPYIPTEEVEEEYEEVEEEYEEVEEI 78
Query: 250 EEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLLEPMGKEQIISLLADAASNHRDVAD 429
E EEEE EEEEEE+ E+ E EEDDEPI+ L+EP KEQI +LL +AA+ HRDVAD
Sbjct: 79 EVEEEEEEEEEEEDGGEQAQGGEYLEEDDEPIKDLVEPFTKEQIATLLCEAAAKHRDVAD 138
Query: 430 RIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAV 564
RIRK+AD D SHRKIFVHGLGWDTT+ TL+ AF QYG IEDCKAV
Sbjct: 139 RIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAV 183
>gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|20148397|gb|AAM10089.1|
putative protein [Arabidopsis thaliana]
Length = 478
Score = 163 bits (412), Expect = 2e-39
Identities = 94/173 (54%), Positives = 118/173 (67%), Gaps = 19/173 (10%)
Frame = +1
Query: 103 ITKKRKLVPKSSQSAELPF-KLQNKLEAEVQ----------EYEEVE-EEVEEEVEEEEE 246
+TKKRKL + S AE P KL+ E E Q + EEVE EEVEEE EEE E
Sbjct: 1 MTKKRKLEGEESNEAEEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYEEVEEEQEEEVE 60
Query: 247 EEEEEEEGEEEEEEEEEEEEVEAEA-------EEEDDEPIQKLLEPMGKEQIISLLADAA 405
++++E++G+E E++ + +EA A E++DDEPIQ LLEP KEQ++SLL +AA
Sbjct: 61 DDDDEDDGDENEDQTDGNR-IEAAATSGSGDQEDDDDEPIQDLLEPFSKEQVLSLLKEAA 119
Query: 406 SNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAV 564
H DVA+RIR+VADED HRKIFVHGLGWDT TL+ AF+QYG IEDCKAV
Sbjct: 120 EKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAV 172
>ref|NP_567042.1| RRM-containing RNA-binding protein; protein id: At3g56860.1,
supported by cDNA: gi_14194148, supported by cDNA:
gi_14335131, supported by cDNA: gi_14596194, supported
by cDNA: gi_20148396, supported by cDNA: gi_20259481
[Arabidopsis thaliana] gi|11358431|pir||T51274
hypothetical protein T8M16_190 - Arabidopsis thaliana
gi|9663005|emb|CAC00749.1| putative protein [Arabidopsis
thaliana] gi|14194149|gb|AAK56269.1|AF367280_1
AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|14335132|gb|AAK59846.1| AT3g56860/T8M16_190
[Arabidopsis thaliana] gi|19682816|emb|CAD28672.1| UBP1
interacting protein 2a [Arabidopsis thaliana]
gi|20259482|gb|AAM13861.1| unknown protein [Arabidopsis
thaliana] gi|21436451|gb|AAM51426.1| unknown protein
[Arabidopsis thaliana] gi|22137068|gb|AAM91379.1|
At3g56860/T8M16_190 [Arabidopsis thaliana]
Length = 478
Score = 163 bits (412), Expect = 2e-39
Identities = 94/173 (54%), Positives = 118/173 (67%), Gaps = 19/173 (10%)
Frame = +1
Query: 103 ITKKRKLVPKSSQSAELPF-KLQNKLEAEVQ----------EYEEVE-EEVEEEVEEEEE 246
+TKKRKL + S AE P KL+ E E Q + EEVE EEVEEE EEE E
Sbjct: 1 MTKKRKLEGEESNEAEEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYEEVEEEQEEEVE 60
Query: 247 EEEEEEEGEEEEEEEEEEEEVEAEA-------EEEDDEPIQKLLEPMGKEQIISLLADAA 405
++++E++G+E E++ + +EA A E++DDEPIQ LLEP KEQ++SLL +AA
Sbjct: 61 DDDDEDDGDENEDQTDGNR-IEAAATSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAA 119
Query: 406 SNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAV 564
H DVA+RIR+VADED HRKIFVHGLGWDT TL+ AF+QYG IEDCKAV
Sbjct: 120 EKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAV 172
>ref|NP_181639.1| RRM-containing RNA-binding protein; protein id: At2g41060.1,
supported by cDNA: gi_16612301 [Arabidopsis thaliana]
gi|7487621|pir||T02113 probable RNA-binding protein
At2g41060 [imported] - Arabidopsis thaliana
gi|3402711|gb|AAD12005.1| putative RNA-binding protein
[Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17
[Arabidopsis thaliana] gi|22137136|gb|AAM91413.1|
At2g41060/T3K9.17 [Arabidopsis thaliana]
Length = 451
Score = 144 bits (363), Expect = 8e-34
Identities = 79/160 (49%), Positives = 105/160 (65%), Gaps = 6/160 (3%)
Frame = +1
Query: 103 ITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVE---EEVEEEVEEEEEEEEEEEEGE 273
+TKKRKL +S++++E K Q + E E E V+ ++ E+ VE++ +E EEE +
Sbjct: 1 MTKKRKLESESNETSEPTEKQQQQCEKEDPEIRNVDNQRDDDEQVVEQDTLKEMHEEEAK 60
Query: 274 EEEEEEEEEEEVEAEAEEEDD---EPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKV 444
E+ E E EDD EPI+ LLEP K+Q++ LL +AA HRDVA+RIR V
Sbjct: 61 GEDNIEAETSSGSGNQGNEDDDEEEPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIV 120
Query: 445 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAV 564
ADED+ HRKIFVHGLGWDT A +L+ AF+QYG IEDCK V
Sbjct: 121 ADEDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
>dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 490
Score = 113 bits (283), Expect = 1e-24
Identities = 62/119 (52%), Positives = 75/119 (62%)
Frame = +1
Query: 208 EEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLLEPMGKEQIIS 387
EEEVEE EEE E +E+E+GE E EEEEE A E D + IQ LL K+Q++
Sbjct: 77 EEEVEEVEVEEEVEVDEDEDGEGEGEEEEE-------AAERDADSIQALLNSFPKDQLVE 129
Query: 388 LLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAV 564
LL+ AA +H DV + + AD D + RKIFVHGLGWD TA TL AF YG IED + V
Sbjct: 130 LLSAAALSHEDVLTAVHRAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVV 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.302 0.124 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,493,028
Number of Sequences: 1393205
Number of extensions: 16359622
Number of successful extensions: 1191613
Number of sequences better than 10.0: 25268
Number of HSP's better than 10.0 without gapping: 140276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505768
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
