Miyakogusa Predicted Gene

chr1.CM0033.650.nc

Related links:

GeneModel
GBrowse(chr1.CM0033.650.nc)

Predicted Sequence Links:

Genome Sequence: CM0033

Full length sequence(787613 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	Q9LFH8_ARATH	787	72.2	80.8	(tr\|Q9LFH8) Putative uncharacterized protein F4P12_90 OS=Arabidopsis thaliana GN=F4P12_90 PE=4 SV=1
TAIR_pep	AT2G37160.2	812	75.0	83.0	\| Symbols: \| transducin family protein / WD-40 repeat family protein \| chr2:15616126-15619608 FORWARD
Medicago	IMGA\|AC128638_51.4	270	64.8	70.4	WD40-like - 3prime partial chr07_pseudomolecule_IMGAG_V2 25639283-25636832 E EGN_Mt071002 20080227
Soybean	Glyma03g33740.1	912	83.9	86.7

A list of protein families, domains and functional sites (searches in InterPro)

IPR001680	WD-40 repeat
chr1.CM0033.650.nc				length: 551 aa.
method	AccNumber	shortName	E-value	location
FPrintScan	PR00320	GPROTEINBRPT	0.0044	318-332 360-374 415-429
HMMPfam	PF00400	WD40	0.025	293-331 335-373 377-428 479-515
HMMSmart	SM00320	no description	15	217-263 292-331 334-373 376-428 478-515
ProfileScan	PS50082	WD_REPEATS_2	10.007	341-382
ProfileScan	PS50294	WD_REPEATS_REGION	16.375	299-437
IPR011046	WD40-like
superfamily	SSF50978	WD40-repeat	8e-36	171-514
no_ID
Gene3D	2.130.10.10	no description	7e-29	191-514
HMMPanther	PTHR14107	WD	0	13-76 144-551
HMMPanther	PTHR14107:SF1	WD-REPEAT	0	13-76 144-551
Seg	seg	seg	NA	71-96 111-136 534-551

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr1.CM0033.650.nc	551	0.278	0.042	0.011	0.833	_	3

Wolf-PSORT

chr1.CM0033.650.nc	nucl 9, chlo 2, vacu 2

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr1.CM0033.650.nc	Not targeted	-28.966	-0.493	-3.999	28.35%	-24.473