Miyakogusa Predicted Gene
- chr1.CM0033.650.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0033.650.nc + phase: 0
(551 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37160.2 | Symbols: | transducin family protein / WD-40 repe... 812 0.0
AT2G37160.1 | Symbols: | transducin family protein / WD-40 repe... 812 0.0
AT3G53390.2 | Symbols: | transducin family protein / WD-40 repe... 808 0.0
AT3G53390.1 | Symbols: | transducin family protein / WD-40 repe... 808 0.0
AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchles... 52 1e-06
AT5G23430.2 | Symbols: | transducin family protein / WD-40 repe... 50 3e-06
AT5G23430.1 | Symbols: | transducin family protein / WD-40 repe... 50 3e-06
AT5G08390.1 | Symbols: | similar to transducin family protein /... 50 5e-06
AT2G43770.1 | Symbols: | transducin family protein / WD-40 repe... 50 5e-06
AT1G11160.1 | Symbols: | nucleotide binding | chr1:3733406-3739... 49 9e-06
AT2G41500.1 | Symbols: LIS, EMB2776 | EMB2776/LIS (LACHESIS); nu... 47 2e-05
AT1G61210.1 | Symbols: | WD-40 repeat family protein / katanin ... 46 5e-05
AT5G49430.1 | Symbols: | transducin family protein / WD-40 repe... 46 7e-05
AT5G14050.1 | Symbols: | transducin family protein / WD-40 repe... 45 8e-05
AT5G25150.1 | Symbols: TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5); nu... 45 1e-04
AT2G47410.1 | Symbols: | nucleotide binding | chr2:19456203-194... 45 1e-04
AT5G60940.1 | Symbols: | transducin family protein / WD-40 repe... 44 2e-04
AT3G18130.1 | Symbols: | guanine nucleotide-binding family prot... 44 3e-04
AT5G60940.2 | Symbols: | transducin family protein / WD-40 repe... 44 3e-04
AT1G73720.1 | Symbols: | transducin family protein / WD-40 repe... 43 4e-04
AT4G02730.1 | Symbols: | transducin family protein / WD-40 repe... 43 6e-04
AT4G05410.1 | Symbols: | transducin family protein / WD-40 repe... 42 7e-04
>AT2G37160.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:15616126-15619608 FORWARD
Length = 544
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/528 (75%), Positives = 438/528 (82%), Gaps = 6/528 (1%)
Query: 1 MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
MMNT+NGM+S S+S+ + N QSPG+KTYFKTPEG+YKL YEKTHPSGLLHY HGKTVT
Sbjct: 1 MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVT 60
Query: 61 QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
QVTLAHLKDK LLGG NG+RALSFV
Sbjct: 61 QVTLAHLKDKPAPSTPTGTSSSSTASSGFRSATAR-LLGGGNGNRALSFVGGNGGAKNVG 119
Query: 121 XXXXXXXXXXXXXXXXVA-NPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSN 179
A N NFDGKGTYL+FNVGDAIFISDLNSQDKDP+KSIH SNSN
Sbjct: 120 ASSRIGASFAASSSNTSATNTNFDGKGTYLVFNVGDAIFISDLNSQDKDPVKSIHISNSN 179
Query: 180 PVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTC 239
P+CHAF D+KDGHDLLIGL+SGDVY+VSLRQQLQDVGKKLV AQHYNKDGSVNNSRCT
Sbjct: 180 PMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKLVSAQHYNKDGSVNNSRCTS 239
Query: 240 ISWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARW 299
I+WVPG DG+FV AHADGNL+VYEKNK+GA DSSF I+D TQFSV A+YSKSNPVARW
Sbjct: 240 IAWVPGGDGSFVAAHADGNLYVYEKNKEGATDSSFSAIRDPTQFSVDKAKYSKSNPVARW 299
Query: 300 HICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKY 359
HI QG+INSI+FSNDGAYLATVGRDGYLR+FD+ ++L+CG KSYYGALLCCAWSMDGKY
Sbjct: 300 HIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKY 359
Query: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVG 419
+LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNS +GE +MYRFGSVG
Sbjct: 360 LLTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSEGSGENVMYRFGSVG 419
Query: 420 QDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKI 479
QDTQLLLWDLEMDEIVVPLRR PPGGSPTYSTGSQS+HWDN+VP+GTLQPAP MRDVPK+
Sbjct: 420 QDTQLLLWDLEMDEIVVPLRR-PPGGSPTYSTGSQSAHWDNIVPMGTLQPAPCMRDVPKL 478
Query: 480 SPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNS 527
SP+VAHRVHTEPLSGLIFTQES++TACREGH+K+W R P++QPS+S
Sbjct: 479 SPVVAHRVHTEPLSGLIFTQESLITACREGHLKIWTR---PDTQPSSS 523
>AT2G37160.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:15616126-15619608 FORWARD
Length = 544
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/528 (75%), Positives = 438/528 (82%), Gaps = 6/528 (1%)
Query: 1 MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
MMNT+NGM+S S+S+ + N QSPG+KTYFKTPEG+YKL YEKTHPSGLLHY HGKTVT
Sbjct: 1 MMNTSNGMISGPSSSSASAANPQSPGIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVT 60
Query: 61 QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
QVTLAHLKDK LLGG NG+RALSFV
Sbjct: 61 QVTLAHLKDKPAPSTPTGTSSSSTASSGFRSATAR-LLGGGNGNRALSFVGGNGGAKNVG 119
Query: 121 XXXXXXXXXXXXXXXXVA-NPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSN 179
A N NFDGKGTYL+FNVGDAIFISDLNSQDKDP+KSIH SNSN
Sbjct: 120 ASSRIGASFAASSSNTSATNTNFDGKGTYLVFNVGDAIFISDLNSQDKDPVKSIHISNSN 179
Query: 180 PVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTC 239
P+CHAF D+KDGHDLLIGL+SGDVY+VSLRQQLQDVGKKLV AQHYNKDGSVNNSRCT
Sbjct: 180 PMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKLVSAQHYNKDGSVNNSRCTS 239
Query: 240 ISWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARW 299
I+WVPG DG+FV AHADGNL+VYEKNK+GA DSSF I+D TQFSV A+YSKSNPVARW
Sbjct: 240 IAWVPGGDGSFVAAHADGNLYVYEKNKEGATDSSFSAIRDPTQFSVDKAKYSKSNPVARW 299
Query: 300 HICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKY 359
HI QG+INSI+FSNDGAYLATVGRDGYLR+FD+ ++L+CG KSYYGALLCCAWSMDGKY
Sbjct: 300 HIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKY 359
Query: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVG 419
+LTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNS +GE +MYRFGSVG
Sbjct: 360 LLTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSEGSGENVMYRFGSVG 419
Query: 420 QDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKI 479
QDTQLLLWDLEMDEIVVPLRR PPGGSPTYSTGSQS+HWDN+VP+GTLQPAP MRDVPK+
Sbjct: 420 QDTQLLLWDLEMDEIVVPLRR-PPGGSPTYSTGSQSAHWDNIVPMGTLQPAPCMRDVPKL 478
Query: 480 SPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNS 527
SP+VAHRVHTEPLSGLIFTQES++TACREGH+K+W R P++QPS+S
Sbjct: 479 SPVVAHRVHTEPLSGLIFTQESLITACREGHLKIWTR---PDTQPSSS 523
>AT3G53390.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:19803759-19807406 FORWARD
Length = 558
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/534 (73%), Positives = 438/534 (82%), Gaps = 4/534 (0%)
Query: 1 MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
MMNT+NGM+S S+S+ N QSPG+KTYFKTPEG+YKL YEKTH SGLLHYAHGKTVT
Sbjct: 1 MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVT 60
Query: 61 QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
QVT+A LK++ LLG NGSRALSFV
Sbjct: 61 QVTIAQLKERAAPSTPTGTSSGYSASSGFRSATAR-LLGTGNGSRALSFVGGNGGGKSVS 119
Query: 121 XXXXXXXX-XXXXXXXXVANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSN 179
+ N NFDGKGTYL+FNV DAIFI DLNSQ+KDP+KSIHFSNSN
Sbjct: 120 TSSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSN 179
Query: 180 PVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTC 239
P+CHAFD D+KDGHDLLIGL+SGDVY+VSLRQQLQDV KKLVGA HYNKDGSVNNSRCT
Sbjct: 180 PMCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTS 239
Query: 240 ISWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARW 299
ISWVPG DGAFVVAHADGNL+VYEKNKDGA +S+FP I+D TQFSV A+YSKSNPVARW
Sbjct: 240 ISWVPGGDGAFVVAHADGNLYVYEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARW 299
Query: 300 HICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKY 359
HICQGSINSI+FSNDGA+LATVGRDGYLR+FD+L ++L+CGGKSYYGALLCC+WSMDGKY
Sbjct: 300 HICQGSINSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKY 359
Query: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVG 419
ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS WSSPNS+ +GE +MYRFGSVG
Sbjct: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVG 419
Query: 420 QDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKI 479
QDTQLLLWDLEMDEIVVPLRR PGGSPTYSTGS S+HWDNV+P+GTLQPAP RDVPK+
Sbjct: 420 QDTQLLLWDLEMDEIVVPLRRA-PGGSPTYSTGS-SAHWDNVIPMGTLQPAPCKRDVPKL 477
Query: 480 SPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNSETSLAT 533
SP++AHRVHTEPLSGL+FTQESV+TACREGHIK+W RP E+Q ++SE + T
Sbjct: 478 SPIIAHRVHTEPLSGLMFTQESVVTACREGHIKIWTRPSESETQTNSSEANPTT 531
>AT3G53390.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr3:19803759-19807406 FORWARD
Length = 558
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/534 (73%), Positives = 438/534 (82%), Gaps = 4/534 (0%)
Query: 1 MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVT 60
MMNT+NGM+S S+S+ N QSPG+KTYFKTPEG+YKL YEKTH SGLLHYAHGKTVT
Sbjct: 1 MMNTSNGMISAPSSSSSPAANPQSPGIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVT 60
Query: 61 QVTLAHLKDKXXXXXXXXXXXXXXXXXXXXXXXXXXLLGGSNGSRALSFVXXXXXXXXXX 120
QVT+A LK++ LLG NGSRALSFV
Sbjct: 61 QVTIAQLKERAAPSTPTGTSSGYSASSGFRSATAR-LLGTGNGSRALSFVGGNGGGKSVS 119
Query: 121 XXXXXXXX-XXXXXXXXVANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSN 179
+ N NFDGKGTYL+FNV DAIFI DLNSQ+KDP+KSIHFSNSN
Sbjct: 120 TSSRISGSFAASNSNTSMTNTNFDGKGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSN 179
Query: 180 PVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTC 239
P+CHAFD D+KDGHDLLIGL+SGDVY+VSLRQQLQDV KKLVGA HYNKDGSVNNSRCT
Sbjct: 180 PMCHAFDPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTS 239
Query: 240 ISWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARW 299
ISWVPG DGAFVVAHADGNL+VYEKNKDGA +S+FP I+D TQFSV A+YSKSNPVARW
Sbjct: 240 ISWVPGGDGAFVVAHADGNLYVYEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARW 299
Query: 300 HICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKY 359
HICQGSINSI+FSNDGA+LATVGRDGYLR+FD+L ++L+CGGKSYYGALLCC+WSMDGKY
Sbjct: 300 HICQGSINSIAFSNDGAHLATVGRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKY 359
Query: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVG 419
ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS WSSPNS+ +GE +MYRFGSVG
Sbjct: 360 ILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVG 419
Query: 420 QDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKI 479
QDTQLLLWDLEMDEIVVPLRR PGGSPTYSTGS S+HWDNV+P+GTLQPAP RDVPK+
Sbjct: 420 QDTQLLLWDLEMDEIVVPLRRA-PGGSPTYSTGS-SAHWDNVIPMGTLQPAPCKRDVPKL 477
Query: 480 SPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNSETSLAT 533
SP++AHRVHTEPLSGL+FTQESV+TACREGHIK+W RP E+Q ++SE + T
Sbjct: 478 SPIIAHRVHTEPLSGLMFTQESVVTACREGHIKIWTRPSESETQTNSSEANPTT 531
>AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchless
protein, putative | chr5:21418649-21421429 FORWARD
Length = 473
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 305 SINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGG 364
++ +SFS DG LA+ D +R++D E + K + +L AWS DGK++++G
Sbjct: 111 AVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGS 170
Query: 365 EDDLVQVWSMEDRKVVAWG-EGHNSWVSGVAFDS-YWSSPNSNDNGETIMYRFGSVGQDT 422
+ + W+ + ++ GH W++G++++ + SSP RF + +D
Sbjct: 171 KSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSP---------CRRFVTSSKDG 221
Query: 423 QLLLWDLEMDEIVVPL 438
+WD+ + + ++ L
Sbjct: 222 DARIWDITLKKSIICL 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%)
Query: 263 EKNKDGAGDSSFPVIKDQTQFSVSHARYSKSN-PVARWHICQGSINSISFSNDGAYLATV 321
E+ GDS ++ F++ S S P R Q +N + FS DG ++A+
Sbjct: 319 ERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASA 378
Query: 322 GRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVA 381
D +R+++ + Q + + + G + +WS D + +L+G +D +++W + +K+
Sbjct: 379 SFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQ 438
Query: 382 WGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLW 427
GH V V + SP +GE ++ S G+D L LW
Sbjct: 439 DLPGHADEVFAVDW-----SP----DGEKVV----SGGKDRVLKLW 471
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 305 SINSISFSNDGAYLATVGRDGYLRVFDY-LKEQLICGGKSYYGALLCCAWSMDGKYILTG 363
S + S+ T +DG R++D LK+ +IC + A+ C W DG I TG
Sbjct: 201 SWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLS-GHTLAVTCVKWGGDG-IIYTG 258
Query: 364 GEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 397
+D +++W K++ +GH W++ +A +
Sbjct: 259 SQDCTIKMWETTQGKLIRELKGHGHWINSLALST 292
>AT5G23430.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:7894076-7899865 REVERSE
Length = 836
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 308 SISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 367
S+ F G + A+ D L+++D K+ I K + + ++ DG+++++GGED+
Sbjct: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDN 165
Query: 368 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLW 427
+V+VW + K++ + H + + F + + + D + W
Sbjct: 166 IVKVWDLTAGKLLTEFKSHEGQIQSLDFHPH-------------EFLLATGSADRTVKFW 212
Query: 428 DLEMDEIV 435
DLE E++
Sbjct: 213 DLETFELI 220
>AT5G23430.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:7894076-7899865 REVERSE
Length = 837
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 308 SISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 367
S+ F G + A+ D L+++D K+ I K + + ++ DG+++++GGED+
Sbjct: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDN 165
Query: 368 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLW 427
+V+VW + K++ + H + + F + + + D + W
Sbjct: 166 IVKVWDLTAGKLLTEFKSHEGQIQSLDFHPH-------------EFLLATGSADRTVKFW 212
Query: 428 DLEMDEIV 435
DLE E++
Sbjct: 213 DLETFELI 220
>AT5G08390.1 | Symbols: | similar to transducin family protein /
WD-40 repeat family protein [Arabidopsis thaliana]
(TAIR:AT5G23430.2); similar to transducin family protein
/ WD-40 repeat family protein [Arabidopsis thaliana]
(TAIR:AT5G23430.1); similar to H0801D08.1 [Oryza sativa
(indica cultivar-group)] (GB:CAJ86243.1); similar to
H0402C08.11 [Oryza sativa (indica cultivar-group)]
(GB:CAJ86235.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO65990.1); contains InterPro
domain WD40 repeat-like (InterPro:IPR011046); contains
InterPro domain WD40/YVTN repeat-like
(InterPro:IPR015943); contains InterPro domain WD40
repeat (InterPro:IPR001680) | chr5:2701449-2706911
FORWARD
Length = 839
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 308 SISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 367
S++F G + A+ D L+++D K+ I K + + ++ DG++I++GGED+
Sbjct: 106 SVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDN 165
Query: 368 LVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLW 427
+V+VW + K++ + H + + F + + + D + W
Sbjct: 166 VVKVWDLTAGKLLHEFKSHEGKIQSLDFHPH-------------EFLLATGSADKTVKFW 212
Query: 428 DLEMDEIV 435
DLE E++
Sbjct: 213 DLETFELI 220
>AT2G43770.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr2:18141349-18142380 REVERSE
Length = 343
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 303 QGSINSISFSNDGAYLATVGRDGYLRVFD---YLKE----QLICGGK-SYYGALLCCAWS 354
Q +I +S S DG+YL T G D L V+D Y + ++ G + ++ LL C+WS
Sbjct: 222 QDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS 281
Query: 355 MDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 395
DG + G D +V +W R+ + GH V+ F
Sbjct: 282 PDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVF 322
>AT1G11160.1 | Symbols: | nucleotide binding | chr1:3733406-3739363
FORWARD
Length = 1021
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 307 NSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 366
+++ F G +LA+ D LRV+D K+ I K + + +S DG+++++GG D
Sbjct: 104 SAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLD 163
Query: 367 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLL 426
++V+VW + K++ + H + + F + + + D +
Sbjct: 164 NVVKVWDLTAGKLLHEFKCHEGPIRSLDF-------------HPLEFLLATGSADRTVKF 210
Query: 427 WDLEMDEIV 435
WDLE E++
Sbjct: 211 WDLETFELI 219
>AT2G41500.1 | Symbols: LIS, EMB2776 | EMB2776/LIS (LACHESIS);
nucleotide binding | chr2:17311397-17313933 REVERSE
Length = 554
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 305 SINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGG 364
S+ I+F DGA A+ G D RV+D + I + + + +S +G ++ +GG
Sbjct: 383 SVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGG 442
Query: 365 EDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFD 396
ED+ ++W + RK + H + VS V ++
Sbjct: 443 EDNQCRIWDLRMRKSLYIIPAHANLVSQVKYE 474
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 306 INSISFSNDGAYLATVGRDGYLRVFDYL--KEQLICGG--KSYYGALLCCAWSMDGKYIL 361
+ ++F G YL T D R++D E L+ G +S YG A+ DG
Sbjct: 342 LARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYG----IAFQQDGALAA 397
Query: 362 TGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQD 421
+ G D L +VW + + + +GH V V F SPN Y S G+D
Sbjct: 398 SCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNF-----SPNG--------YHLASGGED 444
Query: 422 TQLLLWDLEM 431
Q +WDL M
Sbjct: 445 NQCRIWDLRM 454
>AT1G61210.1 | Symbols: | WD-40 repeat family protein / katanin p80
subunit, putative | chr1:22568450-22575220 FORWARD
Length = 1180
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 307 NSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGED 366
+++ F G +LA+ D L+++D K+ I K + + ++ DG+++++GG D
Sbjct: 104 SAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLD 163
Query: 367 DLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLL 426
++V+VW + K++ + H + + F + + + D +
Sbjct: 164 NVVKVWDLTAGKLLHEFKFHEGPIRSLDF-------------HPLEFLLATGSADRTVKF 210
Query: 427 WDLEMDEIV 435
WDLE E++
Sbjct: 211 WDLETFELI 219
>AT5G49430.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:20054564-20062680 REVERSE
Length = 1677
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 298 RW-HICQGSINSISFSNDGAYLATVGRDGYLRVFDYL---------KEQLICGGKSYYGA 347
RW H+ + IS G A R +R Y+ K Q I + + A
Sbjct: 188 RWPHMHADQVRGISLREIGGGFARHHRAPSIRAACYVIAKPSSMVQKMQNIKRLRGHRNA 247
Query: 348 LLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDS 397
+ C G+Y++TG +D LV+VWSM+ +A GH ++ +A S
Sbjct: 248 VYCAILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSS 297
>AT5G14050.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:4533541-4535181 FORWARD
Length = 546
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 283 FSVSHARYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGK 342
F + A++ K P+ + S+ S D +A VG +GY+ + ++LI G
Sbjct: 315 FDLEKAKFDKIGPLVGRE--EKSLEYFEVSQDSNTIAFVGNEGYILLVSTKTKELI-GTL 371
Query: 343 SYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWG 383
G++ A+S DGK++L+ G D V VW + K + G
Sbjct: 372 KMNGSVRSLAFSEDGKHLLSSGGDGQVYVWDLRTMKCLYKG 412
>AT5G25150.1 | Symbols: TAF5 | TAF5 (TBP-ASSOCIATED FACTOR 5);
nucleotide binding | chr5:8677120-8682061 FORWARD
Length = 669
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 311 FSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQ 370
FS G Y A+ D R++ + Q + + + C W + YI TG D V+
Sbjct: 468 FSPFGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVR 527
Query: 371 VWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVG-QDTQLLLWDL 429
+W ++ + V GH S V +A SP+ R+ + G +D +++WDL
Sbjct: 528 LWDVQTGECVRIFIGHRSMVLSLAM-----SPDG---------RYMASGDEDGTIMMWDL 573
Query: 430 EMDEIVVPL 438
+ PL
Sbjct: 574 STARCITPL 582
>AT2G47410.1 | Symbols: | nucleotide binding |
chr2:19456203-19464061 FORWARD
Length = 1520
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 334 KEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGV 393
K Q I + + A+ C + G+Y++TG +D LV++WSME +A GH ++ +
Sbjct: 225 KMQNIKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDL 284
Query: 394 AFDS 397
A S
Sbjct: 285 AVSS 288
>AT5G60940.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:24540318-24542881 FORWARD
Length = 429
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 304 GSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGA--LLCCAWSMDGKYIL 361
G+IN + +S+ G+ T +DG +R+FD + + + + +G + ++ D +++L
Sbjct: 267 GAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVL 326
Query: 362 TGGEDDLVQVWSMEDRKVV 380
+ G+D V++W + ++V
Sbjct: 327 SSGKDSTVKLWEIGSGRMV 345
>AT3G18130.1 | Symbols: | guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) |
chr3:6211115-6212377 REVERSE
Length = 326
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 306 INSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGE 365
+ + S+DG + + DG LR++D + + +L A+S D + I++
Sbjct: 66 VEDVVLSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASR 125
Query: 366 DDLVQVWSM--EDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQ 423
D +++W+ E + ++ G+GH WVS V F SPN T++ S D
Sbjct: 126 DRTIKLWNTLGECKYTISEGDGHKEWVSCVRF-----SPN------TLVPTIVSASWDKT 174
Query: 424 LLLWDLE 430
+ +W+L+
Sbjct: 175 VKVWNLQ 181
>AT5G60940.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:24540983-24542881 FORWARD
Length = 337
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 304 GSINSISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGA--LLCCAWSMDGKYIL 361
G+IN + +S+ G+ T +DG +R+FD + + + + +G + ++ D +++L
Sbjct: 175 GAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVL 234
Query: 362 TGGEDDLVQVWSMEDRKVV 380
+ G+D V++W + ++V
Sbjct: 235 SSGKDSTVKLWEIGSGRMV 253
>AT1G73720.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr1:27728720-27733383 FORWARD
Length = 511
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 311 FSNDGAYLATVGRDGYLRVFDY----LKEQLICGGKSYY----GALLCCAWSMDGKYILT 362
FS DG +LA+ DG++ V+DY LK+ L + +LC +S D + + +
Sbjct: 221 FSPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLAS 280
Query: 363 GGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAF 395
G +D +++W + + + H+ V+ ++F
Sbjct: 281 GSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSF 313
>AT4G02730.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:1207759-1209066 FORWARD
Length = 333
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 311 FSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCC--AWSM-DGKYILTGGEDD 367
FS +G ++ D L++ +Y + + + + C A+S+ +GKYI++G ED+
Sbjct: 221 FSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDN 280
Query: 368 LVQVWSMEDRKVVAWGEGHNSWVSGVA 394
V +W ++ R ++ EGH V V+
Sbjct: 281 CVYLWDLQARNILQRLEGHTDAVISVS 307
>AT4G05410.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:2743226-2745518 REVERSE
Length = 504
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%)
Query: 308 SISFSNDGAYLATVGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDD 367
+++ S+DG YLAT G D ++ ++D + + + + C + + +G D
Sbjct: 227 ALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDR 286
Query: 368 LVQVWSMEDRKVVAWGEGHNSWVSGV 393
V+VW++ED+ + GH + +
Sbjct: 287 TVKVWNVEDKAFITENHGHQGEILAI 312