Miyakogusa Predicted Gene

chr1.CM0105.1090.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.CM0105.1090.nc - phase: 0 
         (1146 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC007315A_C01 KMC007315A_c01                                         791   0.0  

>KMC007315A_C01 KMC007315A_c01
          Length = 535

 Score =  791 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Minus

                                                                        
Query: 748  cttgatgttcctgtgaaacttgtaatagactctgcagttgcatatactatggatgaagtg 807
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  cttgatgttcctgtgaaacttgtaatagactctgcagttgcatatactatggatgaagtg 476

                                                                        
Query: 808  gacatggtttttgtgggtgcagatggagttgtcgaaagtgggggcataattaacatgatg 867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  gacatggtttttgtgggtgcagatggagttgtcgaaagtgggggcataattaacatgatg 416

                                                                        
Query: 868  gggacataccaaatcgcattggttgcacacagtatgaataaaccagtgtatgtcgctgct 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  gggacataccaaatcgcattggttgcacacagtatgaataaaccagtgtatgtcgctgct 356

                                                                        
Query: 928  gaaagctacaagtttgctcgtctttaccctcttgaccaaaaggatctgtcacctgcctta 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355  gaaagctacaagtttgctcgtctttaccctcttgaccaaaaggatctgtcacctgcctta 296

                                                                        
Query: 988  cgccctattgatttcggtgtacccattccgtccaaggttgaggttgaaaggtctgcgcgg 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295  cgccctattgatttcggtgtacccattccgtccaaggttgaggttgaaaggtctgcgcgg 236

                                                                        
Query: 1048 gactacacccctcctcaatatctgactctgcttttcacagatttaggtgttcttactcca 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235  gactacacccctcctcaatatctgactctgcttttcacagatttaggtgttcttactcca 176

                                                   
Query: 1108 tctgttgttagtgatgagttaatccagctatacttatag 1146
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 175  tctgttgttagtgatgagttaatccagctatacttatag 137


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3105
Number of Sequences: 8469
Number of extensions: 3105
Number of successful extensions: 839
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 1
length of query: 1146
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1130
effective length of database: 5,029,270
effective search space: 5683075100
effective search space used: 5683075100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)