Miyakogusa Predicted Gene
- chr1.CM0010.310.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0010.310.nd - phase: 0 /partial
(1269 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC012729A_C01 KMC012729A_c01 44 3e-04
>KMC012729A_C01 KMC012729A_c01
Length = 496
Score = 44.1 bits (22), Expect = 3e-04
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 1051 gtggagaaggttgtggagagaaggcagaggaggatgatcaagaatagagagtcagcagcc 1110
||||||||| ||| ||||| ||||||| ||||||||||||||| | || || || |||
Sbjct: 393 gtggagaagactgttgagaggaggcagaaaaggatgatcaagaatcgggaatctgctgcc 334
Query: 1111 agatctagagccagaaaacagg 1132
| || |||||||| |||||||
Sbjct: 333 cgttccagagccaggaaacagg 312
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5335
Number of Sequences: 8469
Number of extensions: 5335
Number of successful extensions: 1683
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 1
length of query: 1269
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1253
effective length of database: 5,029,270
effective search space: 6301675310
effective search space used: 6301675310
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)