Miyakogusa Predicted Gene
- chr6.CM0055.330.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr6.CM0055.330.nc - phase: 0 /partial
(1023 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000049A_C03 KMC000049A_c03 1320 0.0
KMC001200A_C01 KMC001200A_c01 127 2e-29
>KMC000049A_C03 KMC000049A_c03
Length = 1192
Score = 1320 bits (666), Expect = 0.0
Identities = 666/666 (100%)
Strand = Plus / Minus
Query: 358 agccgtatgtccgtgaaggagaatatagccagcaagccacatactgaaccagttcacagt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 agccgtatgtccgtgaaggagaatatagccagcaagccacatactgaaccagttcacagt 1133
Query: 418 gtggaacaatcattctctatgatccatttgagagagccacctactatcttgaggccatct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 gtggaacaatcattctctatgatccatttgagagagccacctactatcttgaggccatct 1073
Query: 478 gagagcaattcagagacggaagctattgaaattacagtaacaaagttgcttttgaagtca 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 gagagcaattcagagacggaagctattgaaattacagtaacaaagttgcttttgaagtca 1013
Query: 538 tactatgacattgtcagaaaaaatgttgaggattttatccccaaagcaattatgcacttc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tactatgacattgtcagaaaaaatgttgaggattttatccccaaagcaattatgcacttc 953
Query: 598 ttggtaaacaacaccaagagagagctgcacaatgtcttcattaaaaagctatacagagac 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttggtaaacaacaccaagagagagctgcacaatgtcttcattaaaaagctatacagagac 893
Query: 658 aatctgtttgaagagatgttgcaagaacctgaggaaatagccatgaaaagaaagcgttgt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aatctgtttgaagagatgttgcaagaacctgaggaaatagccatgaaaagaaagcgttgt 833
Query: 718 cgagaacttctccgagcttatcagcaggcttttaaggacttggaggagcttcctatggaa 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cgagaacttctccgagcttatcagcaggcttttaaggacttggaggagcttcctatggaa 773
Query: 778 gctgaaacagttgaaagaggatacagtttacctgaaacaactggtttgcctaaaattcat 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gctgaaacagttgaaagaggatacagtttacctgaaacaactggtttgcctaaaattcat 713
Query: 838 ggattaccttcatcaacaatgtattcttcaagcagttctggagactattatggagcttct 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggattaccttcatcaacaatgtattcttcaagcagttctggagactattatggagcttct 653
Query: 898 ccgaagcacaccaagtcaaaaaggtcttcccattctggggaacttcagtctccattgtat 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ccgaagcacaccaagtcaaaaaggtcttcccattctggggaacttcagtctccattgtat 593
Query: 958 gctaatgcagattccaatggaagtggaaggacttacccgtcaggttattatcccacagtt 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gctaatgcagattccaatggaagtggaaggacttacccgtcaggttattatcccacagtt 533
Query: 1018 gatgca 1023
||||||
Sbjct: 532 gatgca 527
>KMC001200A_C01 KMC001200A_c01
Length = 587
Score = 127 bits (64), Expect = 2e-29
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 706 agaaagcgttgtcgagaacttctccgagcttatcagcaggcttttaaggacttggaggag 765
|||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||| |||
Sbjct: 580 agaaagcgctgtcgagaactgctccgagcttatccacaggcttttagggacttggacgag 521
Query: 766 cttcctatggaagctgaaacagttgaaagaggatacagtttacctgaaacaactggtttg 825
|| ||| | |||||||||||||||||||| ||||| ||| |||||| |||||||||||
Sbjct: 520 ctacctcttgaagctgaaacagttgaaaggggatatggttcgcctgaagcaactggtttg 461
Query: 826 ccta 829
||||
Sbjct: 460 ccta 457
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3832
Number of Sequences: 8469
Number of extensions: 3832
Number of successful extensions: 1059
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 5
length of query: 1023
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1007
effective length of database: 5,029,270
effective search space: 5064474890
effective search space used: 5064474890
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)