KMC000049A_c03
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC000049A_C03 KMC000049A_c03
GATAAAAAGTAAGCAATCTAGCATTAAGCAATGCAAAAATAAAATCAGCAGATGAGAAAC
AAATCTTTTAAATAACACCAATTACAACCATCAAGAAATCCCTACATCTTAACCTAAAAT
TGAAAATTCAATATTGCAAGCCCAGTTCACATAGCCAACATGTCCTAATTTACTGCCAAC
AAACTGTGGAGCTGCATAATATTACCAAAAAAAGAAAATAACTTACCAAAGAAAAAAGGT
CATATACATTAATATATAGAATGCCCATACTCAAAAATGTGAAGATCACCTGCTCCTTTT
ATTCTTTCTGGAGCAATGTAAATAATGCCAATGCTGTATGAGAACAAAGGGTGAACTTAT
GTAAAGAAAGCAGAAGCCAACAACATTCCAGACCATTTTAGTTAGACACTACTAATTCAG
CTCCACGAGGCAGAATTCCATGTTTGGAAAGGTGCAGTGTAATCAAAAGAATAACAAACC
TTGAGTTAAACTAATTTGACCAGCGAGCTCATTAAGCTATTGCTCATGCATCAACTGTGG
GATAATAACCTGACGGGTAAGTCCTTCCACTTCCATTGGAATCTGCATTAGCATACAATG
GAGACTGAAGTTCCCCAGAATGGGAAGACCTTTTTGACTTGGTGTGCTTCGGAGAAGCTC
CATAATAGTCTCCAGAACTGCTTGAAGAATACATTGTTGATGAAGGTAATCCATGAATTT
TAGGCAAACCAGTTGTTTCAGGTAAACTGTATCCTCTTTCAACTGTTTCAGCTTCCATAG
GAAGCTCCTCCAAGTCCTTAAAAGCCTGCTGATAAGCTCGGAGAAGTTCTCGACAACGCT
TTCTTTTCATGGCTATTTCCTCAGGTTCTTGCAACATCTCTTCAAACAGATTGTCTCTGT
ATAGCTTTTTAATGAAGACATTGTGCAGCTCTCTCTTGGTGTTGTTTACCAAGAAGTGCA
TAATTGCTTTGGGGATAAAATCCTCAACATTTTTTCTGACAATGTCATAGTATGACTTCA
AAAGCAACTTTGTTACTGTAATTTCAATAGCTTCCGTCTCTGAATTGCTCTCAGATGGCC
TCAAGATAGTAGGTGGCTCTCTCAAATGGATCatagagaatgattgttccacactgtgaa
ctggttcagtatgtggcttgctggctatattctccttcacggacatacggct
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000049A_C03 KMC000049A_c03
(1192 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa... 228 1e-58
ref|NP_567931.1| dynamin-like protein ADL2; protein id: At4g3365... 213 4e-54
dbj|BAB85644.1| dynamin like protein 2a [Arabidopsis thaliana] 213 4e-54
gb|AAC61784.1| similar to dynamin-like protein encoded by GenBan... 213 4e-54
pir||D84514 dynamin-like protein [imported] - Arabidopsis thaliana 200 3e-50
>dbj|BAB86118.1| putative dynamin-like protein ADL2 [Oryza sativa (japonica
cultivar-group)]
Length = 786
Score = 228 bits (582), Expect = 1e-58
Identities = 115/192 (59%), Positives = 148/192 (76%), Gaps = 1/192 (0%)
Frame = -1
Query: 1183 SVKENIASKPHTEPVHSVEQSFSMIHLREPPTILRPSESNSETEAIEITVTKLLLKSYYD 1004
S K+N ++K +T +E S S I LREPP +L+PSES SE EA+EI +TKLLLKSYY+
Sbjct: 559 SAKDNSSNKSYTASTSHLEHSLSTIQLREPPVVLKPSESQSEQEALEIAITKLLLKSYYN 618
Query: 1003 IVRKNVEDFIPKAIMHFLVNNTKRELHNVFIKKLYRDNLFEEMLQEPEEIAMKRKRCREL 824
IVRKNVEDF+PKAIMHFLVN+TKRELHN I KLYRD+LF +ML+EP+EI +KR++ R+
Sbjct: 619 IVRKNVEDFVPKAIMHFLVNHTKRELHNYLITKLYRDDLFADMLREPDEITIKRRQIRDT 678
Query: 823 LRAYQQAFKDLEELPMEAETVERGYSL-PETTGLPKIHGLPSSTMYSSSSSGDYYGASPK 647
L+ QQA+K L+E+P+EA+TVERGYSL + TGLP+ HGL SS SS ++PK
Sbjct: 679 LKVLQQAYKTLDEIPLEADTVERGYSLDADATGLPRAHGLSSSFQDGSSPY-----STPK 733
Query: 646 HTKSKRSSHSGE 611
+S++SSHSGE
Sbjct: 734 QPRSRKSSHSGE 745
>ref|NP_567931.1| dynamin-like protein ADL2; protein id: At4g33650.1, supported by
cDNA: gi_19032334, supported by cDNA: gi_19032336
[Arabidopsis thaliana] gi|7430320|pir||T04982
dynamin-like protein ADL2 - Arabidopsis thaliana
gi|3549667|emb|CAA20578.1| Arabidopsis dynamin-like
protein ADL2 [Arabidopsis thaliana]
gi|7270313|emb|CAB80082.1| Arabidopsis dynamin-like
protein ADL2 [Arabidopsis thaliana]
gi|19032335|dbj|BAB85643.1| dynamin like protein 2a
[Arabidopsis thaliana]
Length = 808
Score = 213 bits (543), Expect = 4e-54
Identities = 108/188 (57%), Positives = 144/188 (76%)
Frame = -1
Query: 1192 SRMSVKENIASKPHTEPVHSVEQSFSMIHLREPPTILRPSESNSETEAIEITVTKLLLKS 1013
+R K+++ +KP +E V + + SMI+L+EPP +LRP+E++SE EA+EI +TKLLL+S
Sbjct: 620 TRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVLRPTETHSEQEAVEIQITKLLLRS 679
Query: 1012 YYDIVRKNVEDFIPKAIMHFLVNNTKRELHNVFIKKLYRDNLFEEMLQEPEEIAMKRKRC 833
YYDIVRKN+ED +PKAIMHFLVN+TKRELHNVFIKKLYR+NLFEEMLQEP+EIA+KRKR
Sbjct: 680 YYDIVRKNIEDSVPKAIMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIAVKRKRT 739
Query: 832 RELLRAYQQAFKDLEELPMEAETVERGYSLPETTGLPKIHGLPSSTMYSSSSSGDYYGAS 653
+E L QQA++ L+ELP+EA++V + G+ K L +S+ YS+SSS Y AS
Sbjct: 740 QETLHVLQQAYRTLDELPLEADSV--------SAGMSKHQELLTSSKYSTSSS---YSAS 788
Query: 652 PKHTKSKR 629
P T+ R
Sbjct: 789 PSTTRRSR 796
>dbj|BAB85644.1| dynamin like protein 2a [Arabidopsis thaliana]
Length = 808
Score = 213 bits (543), Expect = 4e-54
Identities = 108/188 (57%), Positives = 144/188 (76%)
Frame = -1
Query: 1192 SRMSVKENIASKPHTEPVHSVEQSFSMIHLREPPTILRPSESNSETEAIEITVTKLLLKS 1013
+R K+++ +KP +E V + + SMI+L+EPP +LRP+E++SE EA+EI +TKLLL+S
Sbjct: 620 TRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVLRPTETHSEQEAVEIQITKLLLRS 679
Query: 1012 YYDIVRKNVEDFIPKAIMHFLVNNTKRELHNVFIKKLYRDNLFEEMLQEPEEIAMKRKRC 833
YYDIVRKN+ED +PKAIMHFLVN+TKRELHNVFIKKLYR+NLFEEMLQEP+EIA+KRKR
Sbjct: 680 YYDIVRKNIEDSVPKAIMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIAVKRKRT 739
Query: 832 RELLRAYQQAFKDLEELPMEAETVERGYSLPETTGLPKIHGLPSSTMYSSSSSGDYYGAS 653
+E L QQA++ L+ELP+EA++V + G+ K L +S+ YS+SSS Y AS
Sbjct: 740 QETLHVLQQAYRTLDELPLEADSV--------SAGMSKHQELLTSSKYSTSSS---YSAS 788
Query: 652 PKHTKSKR 629
P T+ R
Sbjct: 789 PSTTRRSR 796
>gb|AAC61784.1| similar to dynamin-like protein encoded by GenBank Accession Number
X99669 [Arabidopsis thaliana]
Length = 809
Score = 213 bits (543), Expect = 4e-54
Identities = 108/188 (57%), Positives = 144/188 (76%)
Frame = -1
Query: 1192 SRMSVKENIASKPHTEPVHSVEQSFSMIHLREPPTILRPSESNSETEAIEITVTKLLLKS 1013
+R K+++ +KP +E V + + SMI+L+EPP +LRP+E++SE EA+EI +TKLLL+S
Sbjct: 621 TRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVLRPTETHSEQEAVEIQITKLLLRS 680
Query: 1012 YYDIVRKNVEDFIPKAIMHFLVNNTKRELHNVFIKKLYRDNLFEEMLQEPEEIAMKRKRC 833
YYDIVRKN+ED +PKAIMHFLVN+TKRELHNVFIKKLYR+NLFEEMLQEP+EIA+KRKR
Sbjct: 681 YYDIVRKNIEDSVPKAIMHFLVNHTKRELHNVFIKKLYRENLFEEMLQEPDEIAVKRKRT 740
Query: 832 RELLRAYQQAFKDLEELPMEAETVERGYSLPETTGLPKIHGLPSSTMYSSSSSGDYYGAS 653
+E L QQA++ L+ELP+EA++V + G+ K L +S+ YS+SSS Y AS
Sbjct: 741 QETLHVLQQAYRTLDELPLEADSV--------SAGMSKHQELLTSSKYSTSSS---YSAS 789
Query: 652 PKHTKSKR 629
P T+ R
Sbjct: 790 PSTTRRSR 797
>pir||D84514 dynamin-like protein [imported] - Arabidopsis thaliana
Length = 782
Score = 200 bits (509), Expect = 3e-50
Identities = 96/147 (65%), Positives = 123/147 (83%)
Frame = -1
Query: 1183 SVKENIASKPHTEPVHSVEQSFSMIHLREPPTILRPSESNSETEAIEITVTKLLLKSYYD 1004
+ K N+ +KP +E V Q+ S I+L+EPPTIL+ SE++SE E++EI +TKLLLKSYYD
Sbjct: 609 AAKNNLLNKPFSETTQEVYQNLSTIYLKEPPTILKSSETHSEQESVEIEITKLLLKSYYD 668
Query: 1003 IVRKNVEDFIPKAIMHFLVNNTKRELHNVFIKKLYRDNLFEEMLQEPEEIAMKRKRCREL 824
IVRKNVED +PKAIMHFLVN TKRELHNVFI+KLYR+NL EE+L+EP+E+A+KRKR +E
Sbjct: 669 IVRKNVEDLVPKAIMHFLVNYTKRELHNVFIEKLYRENLIEELLKEPDELAIKRKRTQET 728
Query: 823 LRAYQQAFKDLEELPMEAETVERGYSL 743
LR QQA + L+ELP+EAE+VERGY +
Sbjct: 729 LRILQQANRTLDELPLEAESVERGYKI 755
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 995,083,359
Number of Sequences: 1393205
Number of extensions: 21834015
Number of successful extensions: 60119
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 56139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59983
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 74399966562
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
GENLf002f03 |
BP062476 |
1 |
581 |
| 2 |
MPDL053e08_f |
AV779192 |
9 |
580 |
| 3 |
SPDL064c10_f |
BP055971 |
13 |
394 |
| 4 |
SPDL098b09_f |
BP058144 |
22 |
688 |
| 5 |
SPDL002d07_f |
BP052109 |
38 |
562 |
| 6 |
MF051c10_f |
BP030969 |
42 |
490 |
| 7 |
MPDL004c08_f |
AV776710 |
47 |
596 |
| 8 |
MPDL073f07_f |
AV780265 |
50 |
585 |
| 9 |
MRL006d02_f |
BP084008 |
50 |
423 |
| 10 |
GENLf056c05 |
BP065327 |
53 |
550 |
| 11 |
MPDL084b10_f |
AV780857 |
53 |
637 |
| 12 |
GENLf005g08 |
BP062628 |
54 |
587 |
| 13 |
SPDL069g04_f |
BP056297 |
55 |
281 |
| 14 |
MPDL015a06_f |
AV777249 |
55 |
611 |
| 15 |
MPDL004g11_f |
AV776741 |
55 |
319 |
| 16 |
MR062a06_f |
BP080715 |
55 |
424 |
| 17 |
GENLf018e02 |
BP063327 |
55 |
580 |
| 18 |
GENLf031e11 |
BP063981 |
55 |
571 |
| 19 |
GENLf080e05 |
BP066697 |
55 |
588 |
| 20 |
GENLf028f07 |
BP063841 |
55 |
528 |
| 21 |
SPDL092a05_f |
BP057746 |
55 |
584 |
| 22 |
MPDL055a02_f |
AV779267 |
56 |
584 |
| 23 |
GNLf005f05 |
BP075092 |
56 |
581 |
| 24 |
GENLf036b10 |
BP064219 |
56 |
585 |
| 25 |
MRL035c10_f |
BP085438 |
57 |
525 |
| 26 |
MPDL058g01_f |
AV779463 |
57 |
584 |
| 27 |
MRL031f11_f |
BP085270 |
57 |
426 |
| 28 |
MFBL041e02_f |
BP043334 |
58 |
571 |
| 29 |
SPDL032f07_f |
BP054007 |
62 |
564 |
| 30 |
GENLf016e01 |
BP063208 |
67 |
564 |
| 31 |
MFBL028c12_f |
BP042659 |
67 |
609 |
| 32 |
MPDL011c06_f |
AV777079 |
68 |
414 |
| 33 |
SPDL090g06_f |
BP057666 |
68 |
595 |
| 34 |
SPDL073f06_f |
BP056534 |
84 |
590 |
| 35 |
MFBL026g12_f |
BP042593 |
272 |
824 |
| 36 |
MFB084c06_f |
BP040134 |
672 |
1204 |
|
Lotus japonicus
Kazusa DNA Research Institute