Miyakogusa Predicted Gene
- chr5.CM0328.590.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0328.590.nc + phase: 0
(2142 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC008186A_C01 KMC008186A_c01 791 0.0
KMC013610A_C01 KMC013610A_c01 115 2e-25
KMC011626A_C01 KMC011626A_c01 44 6e-04
>KMC008186A_C01 KMC008186A_c01
Length = 583
Score = 791 bits (399), Expect = 0.0
Identities = 402/403 (99%)
Strand = Plus / Minus
Query: 1740 acacgaaagacaaaacagcttgtccaccgaagtcgcaactaacatgttgggaaacggtta 1799
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acacgaaagaccaaacagcttgtccaccgaagtcgcaactaacatgttgggaaacggtta 524
Query: 1800 tcaggcaccagaagcactgaaaatggtgaagccatcacagaagtgggatgtttattcata 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcaggcaccagaagcactgaaaatggtgaagccatcacagaagtgggatgtttattcata 464
Query: 1860 cggtgtgattctgttagaaatgatcacgggacgattaccagttgtccaagtgggtatctc 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cggtgtgattctgttagaaatgatcacgggacgattaccagttgtccaagtgggtatctc 404
Query: 1920 agaaatggaccttgtgcagtggattcagttctgcattgaggataagaagccactctcaga 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agaaatggaccttgtgcagtggattcagttctgcattgaggataagaagccactctcaga 344
Query: 1980 cgtattagacccgtacttggctgaagaagaagcagataaggaggaagaggtaattgcagt 2039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgtattagacccgtacttggctgaagaagaagcagataaggaggaagaggtaattgcagt 284
Query: 2040 tttgaagattgctatggcttgtgtcaatagcagccctgaaaagagaccttcaatgaggca 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttgaagattgctatggcttgtgtcaatagcagccctgaaaagagaccttcaatgaggca 224
Query: 2100 cgtgcttgatgctcttgatagattgtccatttcctctgattga 2142
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cgtgcttgatgctcttgatagattgtccatttcctctgattga 181
>KMC013610A_C01 KMC013610A_c01
Length = 624
Score = 115 bits (58), Expect = 2e-25
Identities = 118/138 (85%)
Strand = Plus / Minus
Query: 2005 gaagaagcagataaggaggaagaggtaattgcagttttgaagattgctatggcttgtgtc 2064
||||| ||||| ||||| || ||| | |||||||||||||||||||| | |||||||||
Sbjct: 608 gaagatgcagacaaggaagaggagattattgcagttttgaagattgcacttgcttgtgtc 549
Query: 2065 aatagcagccctgaaaagagaccttcaatgaggcacgtgcttgatgctcttgatagattg 2124
|||||||||||| ||||||||| |||||||| || ||||||||| | |||||||||
Sbjct: 548 catagcagccctgcaaagagacccatgatgaggcatgtccttgatgctttagatagattg 489
Query: 2125 tccatttcctctgattga 2142
||||| ||||||||||||
Sbjct: 488 tccatatcctctgattga 471
>KMC011626A_C01 KMC011626A_c01
Length = 501
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 422 aaactctagatttgtctcaaaa 443
||||||||||||||||||||||
Sbjct: 261 aaactctagatttgtctcaaaa 282
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8831
Number of Sequences: 8469
Number of extensions: 8831
Number of successful extensions: 2439
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2434
Number of HSP's gapped (non-prelim): 4
length of query: 2142
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2125
effective length of database: 5,020,801
effective search space: 10669202125
effective search space used: 10669202125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)