Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011626A_C01 KMC011626A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197180.1| putative protein; protein id: At5g16780.1 [Arab... 35 0.36
ref|NP_700494.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.2
>ref|NP_197180.1| putative protein; protein id: At5g16780.1 [Arabidopsis thaliana]
gi|11357805|pir||T51510 hypothetical protein F5E19_120 -
Arabidopsis thaliana gi|9755730|emb|CAC01842.1| putative
protein [Arabidopsis thaliana]
Length = 820
Score = 35.4 bits (80), Expect = 0.36
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +2
Query: 374 TNILQVRKVEHFL*INRKSEPPNSNT 451
T +L RKVEHFL I RKSEP NS+T
Sbjct: 788 TPMLGDRKVEHFLGIKRKSEPGNSDT 813
>ref|NP_700494.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23494883|gb|AAN35218.1|AE014829_18 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 763
Score = 31.6 bits (70), Expect = 5.2
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 241 LFQMRFKNSRFVSKKSCNVPQMTGRCKAHLLSLIILLLKDCA 366
LF + FKN + + K+C VP ++ R +L +I LL+KD A
Sbjct: 28 LFSIYFKNDK-KNTKNCLVPTVSKRITMTVLGMIYLLIKDVA 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,326,759
Number of Sequences: 1393205
Number of extensions: 7363900
Number of successful extensions: 14792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14792
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
