Miyakogusa Predicted Gene
- chr4.CM1334.150.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr4.CM1334.150.nc - phase: 0
(1251 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000686A_C02 KMC000686A_c02 803 0.0
KMC001663A_C01 KMC001663A_c01 167 3e-41
KMC005108A_C02 KMC005108A_c02 48 2e-05
KMC000437A_C02 KMC000437A_c02 44 3e-04
>KMC000686A_C02 KMC000686A_c02
Length = 617
Score = 803 bits (405), Expect = 0.0
Identities = 405/405 (100%)
Strand = Plus / Minus
Query: 841 aatttggatcctaatgttacggatgaccatttgagacaagtttttgggctgtatggagat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatttggatcctaatgttacggatgaccatttgagacaagtttttgggctgtatggagat 558
Query: 901 ttagttcatgtgaagattccacaaggcaagcgatgtgggtttgtccaatttgcagacagg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttagttcatgtgaagattccacaaggcaagcgatgtgggtttgtccaatttgcagacagg 498
Query: 961 agctgcgcagaggaggcacttcgggttttgaatggtacacttttaggcggacaaaatgtt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agctgcgcagaggaggcacttcgggttttgaatggtacacttttaggcggacaaaatgtt 438
Query: 1021 cggctttcgtggggccgaagtccttcaaacaaacagactcagtcagatccaagccagtgg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cggctttcgtggggccgaagtccttcaaacaaacagactcagtcagatccaagccagtgg 378
Query: 1081 aataatagtgctggcggtgctggatattatggatatgctcagggttatgaaaattatggt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aataatagtgctggcggtgctggatattatggatatgctcagggttatgaaaattatggt 318
Query: 1141 tatgctcctgctggacaggaccccaacatgtatgccggttatccaggatatgcaaattac 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatgctcctgctggacaggaccccaacatgtatgccggttatccaggatatgcaaattac 258
Query: 1201 caaccagctcagcaacagcagcagcagccacagcaaatgggatac 1245
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaccagctcagcaacagcagcagcagccacagcaaatgggatac 213
>KMC001663A_C01 KMC001663A_c01
Length = 637
Score = 167 bits (84), Expect = 3e-41
Identities = 225/272 (82%)
Strand = Plus / Minus
Query: 807 gaatgatccaaataatacaactatttttgtcggcaatttggatcctaatgttacggatga 866
|||||||||| | |||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct: 637 gaatgatccatctcatacaactatttttgttggcaacttggatcctaatgtcaatgatga 578
Query: 867 ccatttgagacaagtttttgggctgtatggagatttagttcatgtgaagattccacaagg 926
|||||||| |||||||| | | || ||||| ||||||||||||||||||||| |||
Sbjct: 577 tcatttgaggcaagttttcagcccatacggagaattagttcatgtgaagattccagcagg 518
Query: 927 caagcgatgtgggtttgtccaatttgcagacaggagctgcgcagaggaggcacttcgggt 986
|||||||||||| |||||||||||| |||| |||||| | || || |||||||| |||||
Sbjct: 517 caagcgatgtggatttgtccaatttccagataggagcggtgctgaagaggcactacgggt 458
Query: 987 tttgaatggtacacttttaggcggacaaaatgttcggctttcgtggggccgaagtccttc 1046
||| ||||| ||||| || || || | |||||| || || || ||||| || ||||||||
Sbjct: 457 tttaaatggaacactcttgggtgggcgaaatgtccgtctgtcatggggacgcagtccttc 398
Query: 1047 aaacaaacagactcagtcagatccaagccagt 1078
|| ||||| ||||| ||||| ||| |||||
Sbjct: 397 tcactaacaggctcagccagattcaaaccagt 366
Score = 99.6 bits (50), Expect = 6e-21
Identities = 93/106 (87%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 1101 tggatattatggatatgctcagggttatgaaaattatggttatgctcctgctggacagga 1160
||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 352 tggatattatggatatggtcagggatatgaaaattatggttatgctccttctggtcagga 293
Query: 1161 ccccaacatgtatgccggttatccaggata-tgcaaattaccaacc 1205
||||| ||||| | |||||||||| || ||| |||||||||||
Sbjct: 292 tcccaatgcgtatggcagttatccagggtactgcgaattaccaacc 247
>KMC005108A_C02 KMC005108A_c02
Length = 725
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1210 cagcaacagcagcagcagccacag 1233
||||||||||||||||||||||||
Sbjct: 534 cagcaacagcagcagcagccacag 511
>KMC000437A_C02 KMC000437A_c02
Length = 666
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1209 tcagcaacagcagcagcagcca 1230
||||||||||||||||||||||
Sbjct: 448 tcagcaacagcagcagcagcca 427
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4376
Number of Sequences: 8469
Number of extensions: 4376
Number of successful extensions: 1317
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1305
Number of HSP's gapped (non-prelim): 11
length of query: 1251
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1235
effective length of database: 5,029,270
effective search space: 6211148450
effective search space used: 6211148450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)