Miyakogusa Predicted Gene
- chr1.LjT05B18.230.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.LjT05B18.230.nd - phase: 0 /partial
(1122 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000623A_C01 KMC000623A_c01 932 0.0
>KMC000623A_C01 KMC000623A_c01
Length = 819
Score = 932 bits (470), Expect = 0.0
Identities = 490/499 (98%)
Strand = Plus / Minus
Query: 624 agagattaggaatcggaaactggcagaagagagtacatatgctaaagggctagcttcagc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 agagattaggaatcggaaactggcagaagagagtacatatgctaaagggctagcttcagc 760
Query: 684 tgctgctgttgagcttaaggcactatcagaagaagttgccaaactcatgaaccataacga 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgctgctgttgagcttaaggcactatcagaagaagttgccaaactcatgaaccataacga 700
Query: 744 gaaactagctgcggagctagctgcgtccaagaattcacccacacaacgtagaactagtgg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaaactagctgcggagctagctgcgtccaagaattcacccacacaacgtagaactagtgg 640
Query: 804 aacaatccaaaatgggcgaagggaaagtcatgtcaaacctagacgaaatgatcagggtgg 863
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aacaatcccaaatggccgaagggaaagtcatgtcaaacctagacgaaatgatcagggtgg 580
Query: 864 atcaaactcggataccaagagagaattggccttgagtaaagaaagggaacagtcatatga 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atcaaactcggataccaagagagaattggccttgagtaaagaaagggaacagtcatatga 520
Query: 924 agctgctcttttagnnnnnnntcagaaagaggccgaacttcaaagaaaggttgaggagtc 983
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agctgctcttttagaaaaaaatcagaaagaggccgaacttcaaagaaaggttgaggagtc 460
Query: 984 aaagcaaagggaagcatacctggaaaatgaacttgccaacatgtgggttcttgtggcaaa 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaagcaaagggaagcatacctggaaaatgaacttgccaacatgtgggttcttgtggcaaa 400
Query: 1044 gctaaaaaagtcacacggagctgaaactgatgtttcagggtcgactagagggagtttgca 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gctaaaaaagtcacacggagctgaaactgatgtttcagggtcgactagagggagtttgca 340
Query: 1104 gttcgatggttttgacttt 1122
|||||||||||||||||||
Sbjct: 339 gttcgatggttttgacttt 321
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4245
Number of Sequences: 8469
Number of extensions: 4245
Number of successful extensions: 1141
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 1
length of query: 1122
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1106
effective length of database: 5,029,270
effective search space: 5562372620
effective search space used: 5562372620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)