Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000623A_C01 KMC000623A_c01
(819 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42213.1| unknown protein [Arabidopsis thaliana] 193 2e-48
dbj|BAB03114.1| kinesin (centromere protein) like heavy chain-li... 193 2e-48
gb|AAG51044.1|AC069473_6 kinesin heavy chain, putative; 55116-47... 193 2e-48
ref|NP_187809.2| kinesin-related protein; protein id: At3g12020.... 193 2e-48
ref|NP_196285.2| kinesin-related protein; protein id: At5g06670.... 182 4e-45
>dbj|BAC42213.1| unknown protein [Arabidopsis thaliana]
Length = 449
Score = 193 bits (491), Expect = 2e-48
Identities = 110/170 (64%), Positives = 133/170 (77%), Gaps = 7/170 (4%)
Frame = -2
Query: 818 EIRNRKLAEESTYAKGLASAAAVELKALSEEVAKLMNHNEKLAAELAASKNSPTQRRTSG 639
E+RNRKLAEES+YAKGLASAAAVELKALSEEVAKLMN NE+LAAELA K+ QR +G
Sbjct: 280 ELRNRKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLAAELATQKSPIAQRNKTG 339
Query: 638 TIPN----GRRESHVKPRRNDQGGSNSDTKRELALSKEREQSYEAALLEKNQKEAELQRK 471
T N GRRES K + +D + + KREL +SKERE SYEAAL EK Q+EAEL+R
Sbjct: 340 TTTNVRNNGRRESLAKRQEHDS--PSMELKRELRMSKERELSYEAALGEKEQREAELERI 397
Query: 470 VEESKQREAYLENELANMWVLVAKLKKSHGAETDVSGS---TRGSLQFDG 330
+EE+KQREAYLENELANMWVLV+KL++S GA++++S S TR + Q +G
Sbjct: 398 LEETKQREAYLENELANMWVLVSKLRRSQGADSEISDSISETRQTEQTEG 447
>dbj|BAB03114.1| kinesin (centromere protein) like heavy chain-like protein
[Arabidopsis thaliana]
Length = 1033
Score = 193 bits (491), Expect = 2e-48
Identities = 110/170 (64%), Positives = 133/170 (77%), Gaps = 7/170 (4%)
Frame = -2
Query: 818 EIRNRKLAEESTYAKGLASAAAVELKALSEEVAKLMNHNEKLAAELAASKNSPTQRRTSG 639
E+RNRKLAEES+YAKGLASAAAVELKALSEEVAKLMN NE+LAAELA K+ QR +G
Sbjct: 864 ELRNRKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLAAELATQKSPIAQRNKTG 923
Query: 638 TIPN----GRRESHVKPRRNDQGGSNSDTKRELALSKEREQSYEAALLEKNQKEAELQRK 471
T N GRRES K + +D + + KREL +SKERE SYEAAL EK Q+EAEL+R
Sbjct: 924 TTTNVRNNGRRESLAKRQEHDS--PSMELKRELRMSKERELSYEAALGEKEQREAELERI 981
Query: 470 VEESKQREAYLENELANMWVLVAKLKKSHGAETDVSGS---TRGSLQFDG 330
+EE+KQREAYLENELANMWVLV+KL++S GA++++S S TR + Q +G
Sbjct: 982 LEETKQREAYLENELANMWVLVSKLRRSQGADSEISDSISETRQTEQTEG 1031
>gb|AAG51044.1|AC069473_6 kinesin heavy chain, putative; 55116-47986 [Arabidopsis thaliana]
Length = 956
Score = 193 bits (491), Expect = 2e-48
Identities = 110/170 (64%), Positives = 133/170 (77%), Gaps = 7/170 (4%)
Frame = -2
Query: 818 EIRNRKLAEESTYAKGLASAAAVELKALSEEVAKLMNHNEKLAAELAASKNSPTQRRTSG 639
E+RNRKLAEES+YAKGLASAAAVELKALSEEVAKLMN NE+LAAELA K+ QR +G
Sbjct: 787 ELRNRKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLAAELATQKSPIAQRNKTG 846
Query: 638 TIPN----GRRESHVKPRRNDQGGSNSDTKRELALSKEREQSYEAALLEKNQKEAELQRK 471
T N GRRES K + +D + + KREL +SKERE SYEAAL EK Q+EAEL+R
Sbjct: 847 TTTNVRNNGRRESLAKRQEHDS--PSMELKRELRMSKERELSYEAALGEKEQREAELERI 904
Query: 470 VEESKQREAYLENELANMWVLVAKLKKSHGAETDVSGS---TRGSLQFDG 330
+EE+KQREAYLENELANMWVLV+KL++S GA++++S S TR + Q +G
Sbjct: 905 LEETKQREAYLENELANMWVLVSKLRRSQGADSEISDSISETRQTEQTEG 954
>ref|NP_187809.2| kinesin-related protein; protein id: At3g12020.1 [Arabidopsis
thaliana]
Length = 1030
Score = 193 bits (491), Expect = 2e-48
Identities = 110/170 (64%), Positives = 133/170 (77%), Gaps = 7/170 (4%)
Frame = -2
Query: 818 EIRNRKLAEESTYAKGLASAAAVELKALSEEVAKLMNHNEKLAAELAASKNSPTQRRTSG 639
E+RNRKLAEES+YAKGLASAAAVELKALSEEVAKLMN NE+LAAELA K+ QR +G
Sbjct: 861 ELRNRKLAEESSYAKGLASAAAVELKALSEEVAKLMNQNERLAAELATQKSPIAQRNKTG 920
Query: 638 TIPN----GRRESHVKPRRNDQGGSNSDTKRELALSKEREQSYEAALLEKNQKEAELQRK 471
T N GRRES K + +D + + KREL +SKERE SYEAAL EK Q+EAEL+R
Sbjct: 921 TTTNVRNNGRRESLAKRQEHDS--PSMELKRELRMSKERELSYEAALGEKEQREAELERI 978
Query: 470 VEESKQREAYLENELANMWVLVAKLKKSHGAETDVSGS---TRGSLQFDG 330
+EE+KQREAYLENELANMWVLV+KL++S GA++++S S TR + Q +G
Sbjct: 979 LEETKQREAYLENELANMWVLVSKLRRSQGADSEISDSISETRQTEQTEG 1028
>ref|NP_196285.2| kinesin-related protein; protein id: At5g06670.1 [Arabidopsis
thaliana]
Length = 992
Score = 182 bits (463), Expect = 4e-45
Identities = 103/156 (66%), Positives = 123/156 (78%), Gaps = 2/156 (1%)
Frame = -2
Query: 818 EIRNRKLAEESTYAKGLASAAAVELKALSEEVAKLMNHNEKLAAELAASKNSP--TQRRT 645
EIRN+KLAEES+YAK LASAAA+ELKALSEE+A+LMNHNE+LAA+LAA + S T +
Sbjct: 828 EIRNKKLAEESSYAKELASAAAIELKALSEEIARLMNHNERLAADLAAVQKSSVTTPQGK 887
Query: 644 SGTIPNGRRESHVKPRRNDQGGSNSDTKRELALSKEREQSYEAALLEKNQKEAELQRKVE 465
+G + NGRRES K R +Q S + KREL +SKERE S+EAAL+EK Q+EAELQR VE
Sbjct: 888 TGNLRNGRRESVSK--RKEQENSLMELKRELTVSKEREVSFEAALIEKIQREAELQRTVE 945
Query: 464 ESKQREAYLENELANMWVLVAKLKKSHGAETDVSGS 357
ESKQREAYLENELANMW LVAKL+ A + +S S
Sbjct: 946 ESKQREAYLENELANMWGLVAKLRSQGAANSGLSDS 981
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 704,186,076
Number of Sequences: 1393205
Number of extensions: 16177475
Number of successful extensions: 50930
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 45907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50020
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42296827742
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
