Miyakogusa Predicted Gene

chr1.LjT04O21.220.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.LjT04O21.220.nd + phase: 2 /pseudo/partial
         (2116 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC000244A_C01 KMC000244A_c01                                         287   2e-77

>KMC000244A_C01 KMC000244A_c01
          Length = 710

 Score =  287 bits (145), Expect = 2e-77
 Identities = 191/205 (93%), Gaps = 1/205 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1912 tgatatggagaagaagcagcacttgctcgtgcaggagcaacaggtttggaatcagtatgc 1971
            ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| ||||||
Sbjct: 710  tgatatggagaagaagccgcacttgctcgtgccggagccaccggtttggaatccgtatgc 651

                                                                        
Query: 1972 gagggatgggatgcaaggccaatctagcttggccaaattgaacggtgccggatactatcc 2031
            |||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct: 650  gagggatgggatgccaggcccatctag-ttggctaaattgaacggtgccggatactatcc 592

                                                                        
Query: 2032 tggaggtcctatgccaatgatgccttatgggatgcccccagtcaatggaatgggacctcc 2091
            ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 591  tggaggtcctatgcccatgatgccttatgggatgccccccgtccatggaatgggacctcc 532

                                     
Query: 2092 aaccgggtattaccaagctccttac 2116
             ||||||||||||| ||||||||||
Sbjct: 531  caccgggtattacccagctccttac 507


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5616
Number of Sequences: 8469
Number of extensions: 5616
Number of successful extensions: 1514
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 2
length of query: 2116
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2099
effective length of database: 5,020,801
effective search space: 10538661299
effective search space used: 10538661299
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)