Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000244A_C01 KMC000244A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565595.1| expressed protein; protein id: At2g25430.1, sup... 39 2e-06
gb|AAM61646.1| unknown [Arabidopsis thaliana] 39 2e-06
pir||T05400 hypothetical protein F10M6.80 - Arabidopsis thaliana... 39 2e-05
ref|NP_567892.1| putative protein; protein id: At4g32285.1, supp... 39 2e-05
gb|AAL77661.1| AT4g32280/F10M6_80 [Arabidopsis thaliana] 39 2e-05
>ref|NP_565595.1| expressed protein; protein id: At2g25430.1, supported by cDNA:
12895. [Arabidopsis thaliana] gi|25412316|pir||C84648
hypothetical protein At2g25430 [imported] - Arabidopsis
thaliana gi|4432855|gb|AAD20703.1| expressed protein
[Arabidopsis thaliana] gi|22654977|gb|AAM98081.1|
At2g25430/F13B15.9 [Arabidopsis thaliana]
Length = 653
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 22/36 (61%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 LAKLNGAGYYPGGPMPMMPYGMPPVHGMG-PPTGYY 519
LAK+N GP+P YGMPPV+GMG PPTGYY
Sbjct: 621 LAKMNT------GPVPA--YGMPPVNGMGPPPTGYY 648
Score = 34.7 bits (78), Expect(2) = 2e-06
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = -2
Query: 709 DMEKKPHLLVPEPPVWNPYARDGMPGPSS 623
+MEKK +LL E +W Y RDGM G +S
Sbjct: 592 EMEKKQYLLSQEQQLWQQYQRDGMRGQAS 620
>gb|AAM61646.1| unknown [Arabidopsis thaliana]
Length = 653
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 22/36 (61%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 LAKLNGAGYYPGGPMPMMPYGMPPVHGMG-PPTGYY 519
LAK+N GP+P YGMPPV+GMG PPTGYY
Sbjct: 621 LAKMNT------GPVPT--YGMPPVNGMGPPPTGYY 648
Score = 34.7 bits (78), Expect(2) = 2e-06
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = -2
Query: 709 DMEKKPHLLVPEPPVWNPYARDGMPGPSS 623
+MEKK +LL E +W Y RDGM G +S
Sbjct: 592 EMEKKQYLLSQEQQLWQQYQRDGMRGQAS 620
>pir||T05400 hypothetical protein F10M6.80 - Arabidopsis thaliana
gi|2864615|emb|CAA16962.1| putative protein [Arabidopsis
thaliana] gi|7270132|emb|CAB79946.1| putative protein
[Arabidopsis thaliana]
Length = 842
Score = 39.3 bits (90), Expect(2) = 2e-05
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 LAKLNGAGYYPGGPMPMMPYGMPPVHGMGP-PTGYY 519
LAK+N A MPYGMPPV+GMGP P GYY
Sbjct: 809 LAKMNTA-------QTAMPYGMPPVNGMGPSPMGYY 837
Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 709 DMEKKPHLLVPEPPVWNPYARDGMPGPSS 623
+M+KK +LL E +W Y ++GM G +S
Sbjct: 780 EMDKKQYLLTQEQQLWQQYQQEGMRGQAS 808
>ref|NP_567892.1| putative protein; protein id: At4g32285.1, supported by cDNA:
gi_18700098 [Arabidopsis thaliana]
Length = 635
Score = 39.3 bits (90), Expect(2) = 2e-05
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 LAKLNGAGYYPGGPMPMMPYGMPPVHGMGP-PTGYY 519
LAK+N A MPYGMPPV+GMGP P GYY
Sbjct: 602 LAKMNTA-------QTAMPYGMPPVNGMGPSPMGYY 630
Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 709 DMEKKPHLLVPEPPVWNPYARDGMPGPSS 623
+M+KK +LL E +W Y ++GM G +S
Sbjct: 573 EMDKKQYLLTQEQQLWQQYQQEGMRGQAS 601
>gb|AAL77661.1| AT4g32280/F10M6_80 [Arabidopsis thaliana]
Length = 635
Score = 39.3 bits (90), Expect(2) = 2e-05
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 623 LAKLNGAGYYPGGPMPMMPYGMPPVHGMGP-PTGYY 519
LAK+N A MPYGMPPV+GMGP P GYY
Sbjct: 602 LAKMNTA-------QTAMPYGMPPVNGMGPSPMGYY 630
Score = 31.2 bits (69), Expect(2) = 2e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 709 DMEKKPHLLVPEPPVWNPYARDGMPGPSS 623
+M+KK +LL E +W Y ++GM G +S
Sbjct: 573 EMDKKQYLLTQEQQLWQQYQQEGMRGQAS 601
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 665,218,786
Number of Sequences: 1393205
Number of extensions: 16448468
Number of successful extensions: 48279
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 42491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47933
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
