Miyakogusa Predicted Gene

chr1.CM0760.80.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.CM0760.80.nc - phase: 0 
         (1815 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC008479A_C01 KMC008479A_c01                                         343   4e-94

>KMC008479A_C01 KMC008479A_c01
          Length = 502

 Score =  343 bits (173), Expect = 4e-94
 Identities = 209/221 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1595 gttctgatgttgaaaaggaaacttctggaggggagcagactgtagaaccagctaccaagg 1654
            |||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |||
Sbjct: 502  gttctgatgttgaaaaggaaacttctggaggggacccgactgtagaacccgctacccagg 443

                                                                        
Query: 1655 ttcaagaaaatgtcgatgataccgctgacatgagtaaacttatgatgtcacgtaagaaga 1714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  ttcaagaaaatgtcgatgataccgctgacatgagtaaacttatgatgtcacgtaagaaga 383

                                                                        
Query: 1715 ggaagctattggaagcaatgcagatatctaataaacgcaagcaagatcagactgcgcttc 1774
            |||||||||||||||| |||||||||||| || ||||| ||| ||||| |||||||||| 
Sbjct: 382  ggaagctattggaagccatgcagatatcttattaacgccagccagatccgactgcgcttt 323

                                                     
Query: 1775 ttaaacaacggagaaagagattagatgaagctcagagttaa 1815
            |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322  ttaaaccacggagaaagagattagatgaagctcagagttaa 282


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7257
Number of Sequences: 8469
Number of extensions: 7257
Number of successful extensions: 2124
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2121
Number of HSP's gapped (non-prelim): 3
length of query: 1815
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1798
effective length of database: 5,020,801
effective search space: 9027400198
effective search space used: 9027400198
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)