Miyakogusa Predicted Gene
- chr1.CM0760.160.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0760.160.nd + phase: 0
(972 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002046A_C02 KMC002046A_c02 525 e-149
>KMC002046A_C02 KMC002046A_c02
Length = 836
Score = 525 bits (265), Expect = e-149
Identities = 279/281 (99%), Gaps = 2/281 (0%)
Strand = Plus / Minus
Query: 694 gataaagcttccaaggaggtcaaagaatctcaagatcaacccaacagctcagacaccaac 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gataaagcttccaaggaggtcaaagaatctcaagatcaacccaacagctcagacaccaac 496
Query: 754 aatgggcctgatttggctgaaaacccggaggaggatgcatctactgtggatgtgaaagag 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatgggcctgatttggctgaaaacccggaggaggatgcatctactgtggatgtgaaagag 436
Query: 814 cgtcttaagaaggttgcttcattgaagaagaagaagtccagcaaagaaatggatgctgct 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cgtcttaagaaggttgcttcattgaagaagaagaagtccagcaaagaaatggatgctgct 376
Query: 874 gccaaagctgctg-cccaagaggccgcgg-caaggcatgcaaagcttgctgcagcaaaga 931
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 375 gccaaagctgctgccccaagaggccgcggccaaggcatgcaaagcttgctgcagcaaaga 316
Query: 932 aaaaggagaagaaccattacaaccagcaacctgtgcggtaa 972
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaaaggagaagaaccattacaaccagcaacctgtgcggtaa 275
Score = 515 bits (260), Expect = e-146
Identities = 262/263 (99%)
Strand = Plus / Minus
Query: 413 ctgaggttaagaagcatgctgaagtttctgcccctcctcctctgcctccaaaggaaacag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 ctgaggttaagaagcatgctgaagtttctgcccctcctcctctgcctccaaaggaaacag 777
Query: 473 aacggcagctctccaaaaaggagaggaagaagaaggagcttgctgaacttgaggctcttc 532
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aacggcagctctccnaaaaggagaggaagaagaaggagcttgctgaacttgaggctcttc 717
Query: 533 tagctgattttggagttgcaccgaaagaaagtactgatggtcaagatgagacgcaaggtg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagctgattttggagttgcaccgaaagaaagtactgatggtcaagatgagacgcaaggtg 657
Query: 593 cacctcaggataagaaaggtgatgaagctgatggagatggagaaaagaaagaaactactg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cacctcaggataagaaaggtgatgaagctgatggagatggagaaaagaaagaaactactg 597
Query: 653 ctgctggggggtccaagaatgct 675
|||||||||||||||||||||||
Sbjct: 596 ctgctggggggtccaagaatgct 574
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5645
Number of Sequences: 8469
Number of extensions: 5645
Number of successful extensions: 2166
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 11
length of query: 972
length of database: 5,164,774
effective HSP length: 16
effective length of query: 956
effective length of database: 5,029,270
effective search space: 4807982120
effective search space used: 4807982120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)