Miyakogusa Predicted Gene
- chr1.CM0600.110.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0600.110.nd - phase: 0
(843 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002077A_C01 KMC002077A_c01 632 0.0
>KMC002077A_C01 KMC002077A_c01
Length = 725
Score = 632 bits (319), Expect = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus
Query: 525 accgttgcagtttttagcctttgcttttgtttataggctttttgaaaagttaaaatcctt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 accgttgcagtttttagcctttgcttttgtttataggctttttgaaaagttaaaatcctt 666
Query: 585 tgaatctcctgtaacctccacatataacgaagagggtgaagatacaggagaaggactgcg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgaatctcctgtaacctccacatataacgaagagggtgaagatacaggagaaggactgcg 606
Query: 645 tatgggaaaacgattgttaagatcactggccttggttttcggatgtatagccttttcatc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatgggaaaacgattgttaagatcactggccttggttttcggatgtatagccttttcatc 546
Query: 705 cttgggatacactttcattttgaacataattgagtttgccggtggttttattcctgctac 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttgggatacactttcattttgaacataattgagtttgccggtggttttattcctgctac 486
Query: 765 actttacaacagtcaggagttgataatcaccacatcatctgcagttatgctccatatttt 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actttacaacagtcaggagttgataatcaccacatcatctgcagttatgctccatatttt 426
Query: 825 ggcatcttattacagatag 843
|||||||||||||||||||
Sbjct: 425 ggcatcttattacagatag 407
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3230
Number of Sequences: 8469
Number of extensions: 3230
Number of successful extensions: 960
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 1
length of query: 843
length of database: 5,164,774
effective HSP length: 16
effective length of query: 827
effective length of database: 5,029,270
effective search space: 4159206290
effective search space used: 4159206290
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)