Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002077A_C01 KMC002077A_c01
(725 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65006.1| unknown [Arabidopsis thaliana] 144 1e-33
ref|NP_563823.1| expressed protein; protein id: At1g08640.1, sup... 144 1e-33
gb|AAN31811.1| unknown protein [Arabidopsis thaliana] 142 4e-33
pir||H86218 protein F22O13.12 [imported] - Arabidopsis thaliana ... 117 2e-25
pir||T00717 hypothetical protein F22O13.12 - Arabidopsis thaliana 117 2e-25
>gb|AAM65006.1| unknown [Arabidopsis thaliana]
Length = 294
Score = 144 bits (363), Expect = 1e-33
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = -2
Query: 724 PLQFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSS 545
PLQF++F FVYR+FEKLKSFE+P + YNEEGE++G GLRMGKRLLRSL+LVFG I +S
Sbjct: 190 PLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLAS 249
Query: 544 LGYTFILNIIEFAGGFIPATLYNSQELIITTSSAVMLHILASYYR 410
L YT LN IE+ G IP LYN+QELI+T SSA ML+++AS+YR
Sbjct: 250 LAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294
>ref|NP_563823.1| expressed protein; protein id: At1g08640.1, supported by cDNA:
35718., supported by cDNA: gi_13877838, supported by
cDNA: gi_16323503 [Arabidopsis thaliana]
gi|13877839|gb|AAK43997.1|AF370182_1 unknown protein
[Arabidopsis thaliana] gi|16323504|gb|AAL15246.1|
unknown protein [Arabidopsis thaliana]
Length = 294
Score = 144 bits (363), Expect = 1e-33
Identities = 70/105 (66%), Positives = 86/105 (81%)
Frame = -2
Query: 724 PLQFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSS 545
PLQF++F FVYR+FEKLKSFE+P + YNEEGE++G GLRMGKRLLRSL+LVFG I +S
Sbjct: 190 PLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLAS 249
Query: 544 LGYTFILNIIEFAGGFIPATLYNSQELIITTSSAVMLHILASYYR 410
L YT LN IE+ G IP LYN+QELI+T SSA ML+++AS+YR
Sbjct: 250 LAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294
>gb|AAN31811.1| unknown protein [Arabidopsis thaliana]
Length = 294
Score = 142 bits (359), Expect = 4e-33
Identities = 69/105 (65%), Positives = 86/105 (81%)
Frame = -2
Query: 724 PLQFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSS 545
PLQF++F FVYR+FEKLKSFE+P + YNEEGE++G GLRMGKRLLRSL+LVFG I +S
Sbjct: 190 PLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLAS 249
Query: 544 LGYTFILNIIEFAGGFIPATLYNSQELIITTSSAVMLHILASYYR 410
L YT LN IE+ G IP LYN+QELI+T SSA +L+++AS+YR
Sbjct: 250 LAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFILYVIASFYR 294
>pir||H86218 protein F22O13.12 [imported] - Arabidopsis thaliana
gi|9802577|gb|AAF99779.1|AC003981_29 F22O13.12
[Arabidopsis thaliana]
Length = 319
Score = 117 bits (292), Expect = 2e-25
Identities = 57/85 (67%), Positives = 68/85 (79%)
Frame = -2
Query: 724 PLQFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSS 545
PLQF++F FVYR+FEKLKSFE+P + YNEEGE++G GLRMGKRLLRSL+LVFG I +S
Sbjct: 190 PLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLAS 249
Query: 544 LGYTFILNIIEFAGGFIPATLYNSQ 470
L YT LN IE+ G IP LYN+Q
Sbjct: 250 LAYTGFLNGIEYMGYSIPMVLYNNQ 274
>pir||T00717 hypothetical protein F22O13.12 - Arabidopsis thaliana
Length = 364
Score = 117 bits (292), Expect = 2e-25
Identities = 57/85 (67%), Positives = 68/85 (79%)
Frame = -2
Query: 724 PLQFLAFAFVYRLFEKLKSFESPVTSTYNEEGEDTGEGLRMGKRLLRSLALVFGCIAFSS 545
PLQF++F FVYR+FEKLKSFE+P + YNEEGE++G GLRMGKRLLRSL+LVFG I +S
Sbjct: 235 PLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLAS 294
Query: 544 LGYTFILNIIEFAGGFIPATLYNSQ 470
L YT LN IE+ G IP LYN+Q
Sbjct: 295 LAYTGFLNGIEYMGYSIPMVLYNNQ 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 593,986,164
Number of Sequences: 1393205
Number of extensions: 12701493
Number of successful extensions: 33165
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33112
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
