Miyakogusa Predicted Gene
- chr1.CM0591.620.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0591.620.nd + phase: 0
(1206 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005390A_C01 KMC005390A_c01 1126 0.0
KMC002318A_C01 KMC002318A_c01 846 0.0
>KMC005390A_C01 KMC005390A_c01
Length = 615
Score = 1126 bits (568), Expect = 0.0
Identities = 575/576 (99%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 1 atgactgacaacaa-tctgatggagaaagtgaacgctctcagcgagcgactgaagatcag 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 atgactgacaacaagtctgatggagaaagtgaacgctctcagcgagcgactgaagatcag 99
Query: 60 cggcacggaggttggccgtaagatgaccgccggaatgacctccatgagcttcaaggtcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cggcacggaggttggccgtaagatgaccgccggaatgacctccatgagcttcaaggtcaa 159
Query: 120 ggagtttttccaaggaggaccaaaccaggtcgacaagctcgtcgaagacgccacctccga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ggagtttttccaaggaggaccaaaccaggtcgacaagctcgtcgaagacgccacctccga 219
Query: 180 agccctcgatgaacccgattgggccaccaatctccacctctgcgacctcatcaacaccga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agccctcgatgaacccgattgggccaccaatctccacctctgcgacctcatcaacaccga 279
Query: 240 taaggtcaacagcatcgacctcatccgcgctatcaagaagcggatcatggacaaaagccc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 taaggtcaacagcatcgacctcatccgcgctatcaagaagcggatcatggacaaaagccc 339
Query: 300 tagggttcagtacctcgcactcgtcctccttgaaacctgtgtcaagaactgcgagaaggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagggttcagtacctcgcactcgtcctccttgaaacctgtgtcaagaactgcgagaaggc 399
Query: 360 tttctctgaagtcgccgccgagagggtgctcgatgagatggtccgcctcatcgacgatcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttctctgaagtcgccgccgagagggtgctcgatgagatggtccgcctcatcgacgatcc 459
Query: 420 ccacaccgtcgtcaacaaccgcaacaaggctctcatcatgatcgaagcttggggtgaatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccacaccgtcgtcaacaaccgcaacaaggctctcatcatgatcgaagcttggggtgaatc 519
Query: 480 caccggcgagcttcgttatcttcctgtatttgaagaaacttacaaaagtttgaaatcgag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caccggcgagcttcgttatcttcctgtatttgaagaaacttacaaaagtttgaaatcgag 579
Query: 540 ggggattcggttccctggtcgtgacaatgaaagctt 575
||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggggattcggttccctggtcgtgacaatgaaagctt 615
>KMC002318A_C01 KMC002318A_c01
Length = 715
Score = 846 bits (427), Expect = 0.0
Identities = 441/448 (98%)
Strand = Plus / Minus
Query: 759 ttcaccgcaacaagatgttttgcaggatgatttgaccaccacacttgtacagcagtgtcg 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttcaccgcaacaagatgttttgcaggatgatttgaccaccacacttgtacagcagtgtcg 656
Query: 819 tcgctcccaatctactgtccagcgtattgttgaaacttccggggacaatgaagcactact 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcgctcccaatctactgtccagcgtattgttgaaacttccggggacaatgaagcactact 596
Query: 879 ttttgaggccttgaatgttaatgatgagattcagaaggtcctcgacaagtacgaagaggt 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttttgaggccttgaatgttaatgatgagattcagaaggtcctcgacaagtacgaagaggt 536
Query: 939 gaagaagcctacaactgctccccttcaacctgaaccagctatgatacctgttgccgttga 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gaagaagcctacaactgctccccttcaacctgaaccagctatgatacctgttgccgttga 476
Query: 999 gccagatgagtcgcctcgacatactaaagaggatgccttgatcagaaagccggccggatc 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gccagatgagtcgcctcgacatactaaagaggatgccttgatcagaaagccggccggatc 416
Query: 1059 aagaactgttgtccagggagggagcaatgatgacatgatggatgatcttgatgagatgat 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagaactgttgtccagggagggagcaatgatgacatgatggatgatcttgatgagatgat 356
Query: 1119 ttttgggnnnnnnngtggcgatgcatcagatgcagggcatgacacaaagaagcagcagtc 1178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttttgggaaaaaaagtggcgatgcatcagatgcagggcatgacacaaagaagcagcagtc 296
Query: 1179 ttcaaaagatgatctcatttccttctaa 1206
||||||||||||||||||||||||||||
Sbjct: 295 ttcaaaagatgatctcatttccttctaa 268
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3724
Number of Sequences: 8469
Number of extensions: 3724
Number of successful extensions: 968
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 2
length of query: 1206
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1190
effective length of database: 5,029,270
effective search space: 5984831300
effective search space used: 5984831300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)