Miyakogusa Predicted Gene
- chr1.CM0371.130.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0371.130.nc - phase: 0
(1350 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC014712A_C01 KMC014712A_c01 450 e-126
KMC001815A_C02 KMC001815A_c02 428 e-120
KMC002487A_C01 KMC002487A_c01 131 2e-30
KMC012025A_C01 KMC012025A_c01 62 2e-09
>KMC014712A_C01 KMC014712A_c01
Length = 546
Score = 450 bits (227), Expect = e-126
Identities = 227/227 (100%)
Strand = Plus / Minus
Query: 1124 tttgtatgatcagcaacaacactgctgttgctgaagtcttctctcgcattgattataagt 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttgtatgatcagcaacaacactgctgttgctgaagtcttctctcgcattgattataagt 487
Query: 1184 tcgatctcatgtactctaagcgggcatttgtccactggtatgtgggtgaaggaatggaag 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcgatctcatgtactctaagcgggcatttgtccactggtatgtgggtgaaggaatggaag 427
Query: 1244 aaggtgaattctcagaagcccgggaggatctcgctgctctcgaaaaggattatgaagaag 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaggtgaattctcagaagcccgggaggatctcgctgctctcgaaaaggattatgaagaag 367
Query: 1304 ttggagctgaaggtgaagagggtgaagaagatgaagaaggttattga 1350
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttggagctgaaggtgaagagggtgaagaagatgaagaaggttattga 320
>KMC001815A_C02 KMC001815A_c02
Length = 1678
Score = 428 bits (216), Expect = e-120
Identities = 694/852 (81%), Gaps = 1/852 (0%)
Strand = Plus / Minus
Query: 463 gaacggttgtctgtggattatgggaagaagtctaaacttggctttaccatctatccctct 522
|||||||| || || ||||| || ||||| || ||||| || || |||||||| || ||
Sbjct: 1130 gaacggttatccgtcgattacggcaagaaatccaaactaggtttcaccatctacccttcc 1071
Query: 523 cctcaggtatctactgcagttgttgaaccttacaacagtgttctttccactcattctctt 582
|||||||| || || || ||||| || ||||||||||| ||||| || || ||||| ||
Sbjct: 1070 cctcaggtttccacggcggttgtggagccttacaacagcgttctctcgacgcattcgctc 1011
Query: 583 cttgagcacactgatgtagttgtacttttggacaatgaggcaatatatgatatctgcaga 642
||||||||||||||||| | ||| || ||||||||||| || || ||||| || |||||
Sbjct: 1010 cttgagcacactgatgtggctgtgctgttggacaatgaagcgatctatgacatttgcagg 951
Query: 643 agatcattagatatagaaaggccaacttacaccaacttgaatcgtctaatttctcaagtt 702
||||| | ||||| || ||||| || ||||| |||||||| | || || ||||| |
Sbjct: 950 agatctcttgatattgagaggcctacgtacacgaacttgaacaggcttatctctcagatc 891
Query: 703 atctcttccttgaccacatccttgagattcgatggcgcaattaacgtggacgttactgag 762
|| || || ||||| || || ||||| || ||||| || || || || || | ||||||
Sbjct: 890 atttcctcattgactacctctttgaggtttgatggtgcgatcaatgtagatatcactgag 831
Query: 763 tttcagactaacctggtaccatatccccgtatccatttcatgctttcatcgtatgctcct 822
|||||||||||||| || || ||||| |||||||||||||||||||| || ||||| ||
Sbjct: 830 tttcagactaaccttgtgccttatcctcgtatccatttcatgctttcgtcctatgcgccg 771
Query: 823 gtgatatctgctgcgaaggcctaccatgaacagatatcgattcctgagatcaccagtgct 882
|| || |||||||| |||||||||||||| ||| | ||| | ||||||||||||| |||
Sbjct: 770 gttatctctgctgctaaggcctaccatgagcagctttcggtgcctgagatcaccaatgcg 711
Query: 883 gtttttgagccatcaaatatgatggctaagtgtgatccaagacacgggaagtacatggcg 942
|| |||||||| || | |||||||| ||||||||||| || || ||||||||||||||
Sbjct: 710 gtgtttgagccttccagcatgatggcgaagtgtgatcctaggcatgggaagtacatggct 651
Query: 943 tgttgccttatgtatcgtggagatgttgtgcccaaagatgtcaatgcagctgttgcaaat 1002
|| || | ||||| | ||||||||||| || || ||||||||||| |||||||| |
Sbjct: 650 tgctgtttgatgtacaggggagatgttgttccgaaggatgtcaatgctgctgttgccacc 591
Query: 1003 atcaagacgaagcgaacagttcagtttgttgactggtgtcctactggtttcaagtgtgga 1062
||||| || ||| | || |||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 590 atcaaaactaagaggactgttcagtttgttgattggtgcccaactggtttcaaatgtggt 531
Query: 1063 atcaactaccagcctccaacagtggtaccagcaggtgatcttgccaaggtgcagcgcgca 1122
||||||||||||||||| |||| ||||| | ||||| ||||| ||||||||||| ||
Sbjct: 530 atcaactaccagcctccttcagttgtacctggtggtgaccttgctaaggtgcagcgggct 471
Query: 1123 gtttgtatgatcagcaacaacactgctgttgctgaagtcttctctcgcattg-attataa 1181
||||| |||||||| ||||||||||| |||||||| || ||||||||||||| | | ||
Sbjct: 470 gtttgcatgatcagtaacaacactgcagttgctgaggtgttctctcgcattgcaccacaa 411
Query: 1182 gttcgatctcatgtactctaagcgggcatttgtccactggtatgtgggtgaaggaatgga 1241
||| ||||||||||| | ||| |||| ||||||||||||||||| ||||| || |||||
Sbjct: 410 gtttgatctcatgtatgccaagagggcctttgtccactggtatgttggtgagggtatgga 351
Query: 1242 agaaggtgaattctcagaagcccgggaggatctcgctgctctcgaaaaggattatgaaga 1301
|||||| || ||||||||||| || || ||||| |||||||| || || |||||||| ||
Sbjct: 350 agaaggggagttctcagaagctcgtgaagatcttgctgctcttgagaaagattatgagga 291
Query: 1302 agttggagctga 1313
|||||| |||||
Sbjct: 290 agttggtgctga 279
>KMC002487A_C01 KMC002487A_c01
Length = 755
Score = 131 bits (66), Expect = 2e-30
Identities = 117/134 (87%)
Strand = Plus / Minus
Query: 1180 aagttcgatctcatgtactctaagcgggcatttgtccactggtatgtgggtgaaggaatg 1239
||||| ||||||||||| || ||||| || |||||||||||||| |||||||| || |||
Sbjct: 504 aagtttgatctcatgtattccaagcgtgcctttgtccactggtacgtgggtgagggtatg 445
Query: 1240 gaagaaggtgaattctcagaagcccgggaggatctcgctgctctcgaaaaggattatgaa 1299
|||||||||||||| || ||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 444 gaagaaggtgaattttctgaagctcgtgaagatcttgctgctcttgaaaaggattatgaa 385
Query: 1300 gaagttggagctga 1313
||||| || |||||
Sbjct: 384 gaagtgggtgctga 371
Score = 117 bits (59), Expect = 3e-26
Identities = 167/203 (82%)
Strand = Plus / Minus
Query: 931 aagtacatggcgtgttgccttatgtatcgtggagatgttgtgcccaaagatgtcaatgca 990
||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||||
Sbjct: 753 aagtacatggcgtgttgtctgatgtaccgtggtgatgttgtgcccaaagatgtgaatgct 694
Query: 991 gctgttgcaaatatcaagacgaagcgaacagttcagtttgttgactggtgtcctactggt 1050
||||||| ||||| || ||| |||| |||||||||| || ||||| |||||||||
Sbjct: 693 gctgttggctccatcaaaaccaagagaaccattcagtttgtagattggtgccctactggt 634
Query: 1051 ttcaagtgtggaatcaactaccagcctccaacagtggtaccagcaggtgatcttgccaag 1110
||||| || || |||||||| ||||| || || || || || | ||||| ||||| |||
Sbjct: 633 ttcaaatgcggtatcaactatcagccacccactgttgttccgggtggtgaccttgcaaag 574
Query: 1111 gtgcagcgcgcagtttgtatgat 1133
|||||| | |||||||| |||||
Sbjct: 573 gtgcagagggcagtttgcatgat 551
>KMC012025A_C01 KMC012025A_c01
Length = 653
Score = 61.9 bits (31), Expect = 2e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 385 tgcactggtttgcaaggattcttggttttcaatgctgtcggtggtggtaccggttctgg 443
||||||||| ||||||| |||||||| ||||||||||| ||||| || || ||||||||
Sbjct: 580 tgcactggtctgcaagggttcttggtcttcaatgctgttggtggaggaactggttctgg 638
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 40 attcaagtggggaattcatgttgggagctgtattgccttgagcatggaat 89
|||||||| || ||| | ||||||||||| || || ||||||||||||||
Sbjct: 235 attcaagtcggaaatgcctgttgggagctctactgtcttgagcatggaat 284
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4855
Number of Sequences: 8469
Number of extensions: 4855
Number of successful extensions: 1412
Number of sequences better than 1.0e-03: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 11
length of query: 1350
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1333
effective length of database: 5,020,801
effective search space: 6692727733
effective search space used: 6692727733
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)