Miyakogusa Predicted Gene
- chr1.CM0098.420.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0098.420.nd - phase: 0 /partial
(584 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003626A_C01 KMC003626A_c01 460 e-130
KMC018379A_C01 KMC018379A_c01 66 4e-11
>KMC003626A_C01 KMC003626A_c01
Length = 564
Score = 460 bits (232), Expect = e-130
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 246 cgatgaaccgatccagaagcttctcgaacccatggggaaggagcagatcattagcctcct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgatgaaccgatccagaagcttctcgaacccatggggaaggagcagatcattagcctcct 392
Query: 306 tgccgacgcggcgtctaaccaccgcgatgtagcagatcggatccgtaaggtggccgacga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgccgacgcggcgtctaaccaccgcgatgtagcagatcggatccgtaaggtggccgacga 452
Query: 366 ggacgtttctcatcggaaaatcttcgttcacggcctcgggtgggataccaccgccacgac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggacgtttctcatcggaaaatcttcgttcacggcctcgggtgggataccaccgccacgac 512
Query: 426 gctggtttacgcgttccagcagtacggcgcgattgaggattgcaaggcggtt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gctggtttacgcgttccagcagtacggcgcgattgaggattgcaaggcggtt 564
Score = 202 bits (102), Expect = 3e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 atggttaacgaatccatcaccaagaagcgaaagctcgtccccaaatcctctcaatcggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atggttaacgaatccatcaccaagaagcgaaagctcgtccccaaatcctctcaatcggcg 147
Query: 61 gagctaccgttcaagctgcagaacaagttggaggctgaggtt 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gagctaccgttcaagctgcagaacaagttggaggctgaggtt 189
>KMC018379A_C01 KMC018379A_c01
Length = 722
Score = 65.9 bits (33), Expect = 4e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 446 agtacggcgcgattgaggattgcaaggcggttaccgataaggtcaccgggaagtcgaagg 505
||||||| | ||| ||||||||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 649 agtacggtgagatcgaggattgcaaggcggttaccgacaaggttactgggaaatcgaagg 708
Query: 506 g 506
|
Sbjct: 709 g 709
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 848
Number of Sequences: 8469
Number of extensions: 848
Number of successful extensions: 211
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 4
length of query: 584
length of database: 5,164,774
effective HSP length: 16
effective length of query: 568
effective length of database: 5,029,270
effective search space: 2856625360
effective search space used: 2856625360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)