Miyakogusa Predicted Gene
- chr1.CM0098.370.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0098.370.nd - phase: 0
(951 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003127A_C01 KMC003127A_c01 525 e-149
>KMC003127A_C01 KMC003127A_c01
Length = 642
Score = 525 bits (265), Expect = e-149
Identities = 278/281 (98%), Gaps = 1/281 (0%)
Strand = Plus / Minus
Query: 672 tccaaatgggattgcatggatttctaatctagtccaaaaaatcacagaagttgcattgaa 731
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 642 tccaaatgggattgcatggatttctaatctagtccaaaaaatcacaaaagttgcattgaa 583
Query: 732 caaaagtgagtctattcatgttgataagaatttgattgaagggccaaatccaaatcagac 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caaaagtgagtctattcatgttgataagaatttgattgaagggccaaatccaaatcagac 523
Query: 792 tggaaaattatggattcctctcctgtatgcattacaatatttctttgtgataaagccgat 851
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 522 tggaaaattatggattcctctcctgtatgcattaccatatttctttgtgataaagccgat 463
Query: 852 agaaggactgatccagcaggaca-tttcaagtgagagtaggccttcatgggagatgcgag 910
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 462 agaaggactgatccagcaggacactttcaagtgagagtaggccttcatgggagatgcgag 403
Query: 911 atgcaggtttacgcaaaagagatcaaagggatctctattag 951
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgcaggtttacgcaaaagagatcaaagggatctctattag 362
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3371
Number of Sequences: 8469
Number of extensions: 3371
Number of successful extensions: 965
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 1
length of query: 951
length of database: 5,164,774
effective HSP length: 16
effective length of query: 935
effective length of database: 5,029,270
effective search space: 4702367450
effective search space used: 4702367450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)