Miyakogusa Predicted Gene

Lj6g3v2066940.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr6
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7ILH1_MEDTR 1131 63.3 72.3 (tr|G7ILH1) Katanin p80 WD40-containing subunit B1 OS=Medicago truncatula GN=MTR_2g012630 PE=4 SV=1
TAIR_pep AT1G61210.1 643 63.0 73.7 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:22564785-22571555 FORWARD LENGTH=1181
Medicago Medtr2g012630.2 1145 64.8 73.8 | katanin p80 WD40 repeat subunit B1-like protein | HC | chr2:3190921-3179833 | 20130731
Soybean Glyma13g31790.1 1096 79.1 83.9  
LJGI gnl|LJGI|TC81455 1070 98.8 98.8 similar to UniRef100_A7R3U5 Cluster: Chromosome undetermined scaffold_569, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome undetermined scaffold_569, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj6g3v2066940.1 length: 867 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.017 8-43
91-128
134-170
174-212
228-248
HMMSmart SM00320 WD40 0.011 4-44
47-86
89-128
131-170
173-212
215-253
ProfileScan PS50082 WD_REPEATS_2 14.619 11-53
54-95
96-137
138-179
180-221
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 4.4e-75 8-295
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 58.345 11-248
superfamily SSF50978 WD40 2.9e-69 4-294
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 157-171
199-213
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.1e-07 115-129
157-171
199-213
IPR026962 Katanin p80 subunit B1
Molecular Function GO:0008017 microtubule binding    
Cellular Component GO:0008352 katanin complex    
Biological Process GO:0051013 microtubule severing    
HMMPanther PTHR19845 KATANIN 1.1e-145 1-311
Wolf-PSORT
Lj6g3v2066940.1	nucl 8, chlo 3, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj6g3v2066940.1