Miyakogusa Predicted Gene

Lj6g3v2066940.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj6g3v2066940.1 tr|G7ILH1|G7ILH1_MEDTR Katanin p80
WD40-containing subunit B1 OS=Medicago truncatula
GN=MTR_2g012630,63.12,0,WD40 repeat-like,WD40-repeat-containing
domain; no description,WD40/YVTN repeat-like-containing
doma,CUFF.60622.1
         (2607 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC81455 similar to UniRef100_A7R3U5 Cluster: Chromosome...  1070   0.0  
gnl|LJGI|TC70763 similar to UniRef100_A7R3U4 Cluster: Chromosome...    80   8e-14

>gnl|LJGI|TC81455 similar to UniRef100_A7R3U5 Cluster: Chromosome undetermined
           scaffold_569, whole genome shotgun sequence; n=2; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_569,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (35%)
          Length = 786

 Score = 1070 bits (540), Expect = 0.0
 Identities = 554/561 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaagcggggttacaaaattcaggaatttgtggctcattcaagtggtatcaattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atggcaaagcggggttacaaaattcaggaatttgtggctcattcaagtggtatcaattgt 285

                                                                       
Query: 61  ttgaacattggaaagaaggcttgtcgccttttcgttacaggtggggatgatcacaaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgaacattggaaagaaggcttgtcgccttttcgttacaggtggggatgatcacaaggtt 345

                                                                       
Query: 121 aatctgtggacgattggcaaaccgacttgtgtaacgagcttgtctggtcattctagtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatctgtggacgattggcaaaccgacttgtgtaacgagcttgtctggtcattctagtcca 405

                                                                       
Query: 181 gttgaatctgtcgcttttgactctggagaagtgttagttcttgctggagcatcatcaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gttgaatctgtcgcttttgactctggagaagtgttagttcttgctggagcatcatcaggt 465

                                                                       
Query: 241 gtgattaagctttgggatttggaagaaggaaagatggttcgcactgttgctggacacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgattaagctttgggatttggaagaaggaaagatggttcgcactgttgctggacacagg 525

                                                                       
Query: 301 tccaattgcaatgctgttgaatttcatccgtttggtgagtttttcgcatctggctccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tccaattgcaatgctgttgaatttcatccgtttggtgagtttttcgcatctggctccatg 585

                                                                       
Query: 361 gacactaatctaaagatttgggacattcgnnnnnnnggatgtattcatacatacaagggt 420
           |||||||||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 586 gacactaatctaaagatttgggacattcgaaaaaaaggatgtattcatacatacaagggt 645

                                                                       
Query: 421 cacagccagggcatcagtactatcaaattcactccagatggtcgttgggtagtttctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cacagccagggcatcagtactatcaaattcactccagatggtcgttgggtagtttctggt 705

                                                                       
Query: 481 ggatttgataatgtcgtgaaggtgtgggatcttactgctggaaagctcttgcatgacttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggatttgataatgtcgtgaaggtgtgggatcttactgctggaaagctcttgcatgacttc 765

                                
Query: 541 aagttccatgaaggacacatt 561
           |||||||||||||||||||||
Sbjct: 766 aagttccatgaaggacacatt 786


>gnl|LJGI|TC70763 similar to UniRef100_A7R3U4 Cluster: Chromosome undetermined
            scaffold_569, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_569, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (85%)
          Length = 1195

 Score = 79.8 bits (40), Expect = 8e-14
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                    
Query: 2418 taacacaatgtctgaaaccgataaatctccgagtataccg 2457
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    taacacaatgtctgaaaccgataaatctccgagtataccg 40