Miyakogusa Predicted Gene

Lj6g3v1948660.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MF03_SOYBN 1046 75.9 83.8 (tr|I1MF03) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT4G21060.2 820 59.8 73.3 | Symbols: | Galactosyltransferase family protein | chr4:11242003-11244860 FORWARD LENGTH=684

Medicago Medtr2g018770.1 1025 75.7 83.7 | beta-1,3-galactosyltransferase-like protein | HC | chr2:5954709-5961525 | 20130731

Soybean Glyma05g27610.1 1017 73.2 83.4

LJGI gnl|LJGI|GO013067 894 99.8 99.8 similar to UniRef100_A7Q189 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1948660.1 length: 666 aa.

IPR001079 Galectin, carbohydrate recognition domain

method AccNumber shortName E-value location

Molecular Function GO:0030246 carbohydrate binding

HMMPfam PF00337 Gal-bind_lectin 2.3e-48 200-405

HMMSmart SM00908 Galactoside-binding 3e-29 201-406

ProfileScan PS51304 GALECTIN 31.943 197-407

IPR002659 Glycosyl transferase, family 31

Biological Process GO:0006486 protein glycosylation

Molecular Function GO:0008378 galactosyltransferase activity

Cellular Component GO:0016020 membrane

HMMPanther PTHR11214 BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASET[250-666] 4.3e-246

HMMPfam PF01762 Galactosyl_T 2.3e-33 453-633

IPR008985 Concanavalin A-like lectin/glucanases superfamily

superfamily SSF49899 Concanavalin 2.9e-25 193-409

IPR013320 Concanavalin A-like lectin/glucanase, subgroup

Gene3D G3DSA:2.60.120.200 no description 1.1e-25 347-404

no_ID

HMMPanther PTHR11214:SF11 BETA 4.3e-246 250-666

ProfileScan PS51257 PROKAR_LIPOPROTEIN 7.000 1-33

Seg seg seg NA 19-31
54-70
580-592

Wolf-PSORT

Lj6g3v1948660.1 plas 8, mito 2, vacu 2, cyto 1, E.R. 1, chlo_mito 1, cyto_mito 1, cyto_E.R. 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1948660.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MF03_SOYBN	1046	75.9	83.8	(tr\|I1MF03) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT4G21060.2	820	59.8	73.3	\| Symbols: \| Galactosyltransferase family protein \| chr4:11242003-11244860 FORWARD LENGTH=684
Medicago	Medtr2g018770.1	1025	75.7	83.7	\| beta-1,3-galactosyltransferase-like protein \| HC \| chr2:5954709-5961525 \| 20130731
Soybean	Glyma05g27610.1	1017	73.2	83.4
LJGI	gnl\|LJGI\|GO013067	894	99.8	99.8	similar to UniRef100_A7Q189 Cluster: Chromosome chr10 scaffold_43, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr10 scaffold_43, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

IPR001079	Galectin, carbohydrate recognition domain
Lj6g3v1948660.1				length: 666 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0030246	carbohydrate binding
HMMPfam	PF00337	Gal-bind_lectin	2.3e-48	200-405
HMMSmart	SM00908	Galactoside-binding	3e-29	201-406
ProfileScan	PS51304	GALECTIN	31.943	197-407
IPR002659	Glycosyl transferase, family 31
Biological Process	GO:0006486	protein glycosylation
Molecular Function	GO:0008378	galactosyltransferase activity
Cellular Component	GO:0016020	membrane
HMMPanther	PTHR11214	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASET[250-666]	4.3e-246
HMMPfam	PF01762	Galactosyl_T	2.3e-33	453-633
IPR008985	Concanavalin A-like lectin/glucanases superfamily
superfamily	SSF49899	Concanavalin	2.9e-25	193-409
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
Gene3D	G3DSA:2.60.120.200	no description	1.1e-25	347-404
no_ID
HMMPanther	PTHR11214:SF11	BETA	4.3e-246	250-666
ProfileScan	PS51257	PROKAR_LIPOPROTEIN	7.000	1-33
Seg	seg	seg	NA	19-31 54-70 580-592