Miyakogusa Predicted Gene

Lj6g3v1116100.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr6

Full length sequence(26885540 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MHR7_SOYBN 1325 70.8 80.0 (tr|I1MHR7) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT1G30810.2 619 60.9 73.5 | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:10938139-10941505 REVERSE LENGTH=819

Medicago Medtr2g047130.2 1179 64.7 74.8 | transcription factor jumonji family protein | HC | chr2:20678070-20672347 | 20130731

Soybean Glyma15g22050.1 1238 68.1 76.4

LJGI gnl|LJGI|TC75944 848 100.0 100.0 weakly similar to UniRef100_A7QC14 Cluster: Chromosome chr10 scaffold_76, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_76, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj6g3v1116100.1 length: 949 aa.

IPR003347 JmjC domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF02373 JmjC 1.1e-45 206-322

HMMSmart SM00558 A 1.7e-63 173-339

ProfileScan PS51184 JMJC 39.706 173-339

IPR003888 FY-rich, N-terminal

Cellular Component GO:0005634 nucleus

HMMPfam PF05964 FYRN 1.5e-08 709-759

HMMSmart SM00541 "FY-rich" 2.4e-09 716-759

ProfileScan PS51542 FYRN 21.573 702-760

IPR003889 FY-rich, C-terminal

Cellular Component GO:0005634 nucleus

HMMPfam PF05965 FYRC 3.8e-21 763-851

HMMSmart SM00542 "FY-rich" 4.9e-20 766-854

ProfileScan PS51543 FYRC 22.636 762-852

IPR004198 Zinc finger, C5HC2-type

Cellular Component GO:0005634 nucleus

HMMPfam PF02928 zf-C5HC2 3.1e-15 426-479

no_ID

HMMPanther PTHR10694 JUMONJI 1.5e-180 55-506

HMMPanther PTHR10694:SF8 RETINOBLASTOMA 1.5e-180 55-506

Seg seg seg NA 37-55
263-272
805-816

superfamily SSF51197 Clavaminate 1.5e-34 179-362

Wolf-PSORT

Lj6g3v1116100.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj6g3v1116100.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MHR7_SOYBN	1325	70.8	80.0	(tr\|I1MHR7) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT1G30810.2	619	60.9	73.5	\| Symbols: \| Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein \| chr1:10938139-10941505 REVERSE LENGTH=819
Medicago	Medtr2g047130.2	1179	64.7	74.8	\| transcription factor jumonji family protein \| HC \| chr2:20678070-20672347 \| 20130731
Soybean	Glyma15g22050.1	1238	68.1	76.4
LJGI	gnl\|LJGI\|TC75944	848	100.0	100.0	weakly similar to UniRef100_A7QC14 Cluster: Chromosome chr10 scaffold_76, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr10 scaffold_76, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)

IPR003347	JmjC domain
Lj6g3v1116100.1				length: 949 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF02373	JmjC	1.1e-45	206-322
HMMSmart	SM00558	A	1.7e-63	173-339
ProfileScan	PS51184	JMJC	39.706	173-339
IPR003888	FY-rich, N-terminal
Cellular Component	GO:0005634	nucleus
HMMPfam	PF05964	FYRN	1.5e-08	709-759
HMMSmart	SM00541	"FY-rich"	2.4e-09	716-759
ProfileScan	PS51542	FYRN	21.573	702-760
IPR003889	FY-rich, C-terminal
Cellular Component	GO:0005634	nucleus
HMMPfam	PF05965	FYRC	3.8e-21	763-851
HMMSmart	SM00542	"FY-rich"	4.9e-20	766-854
ProfileScan	PS51543	FYRC	22.636	762-852
IPR004198	Zinc finger, C5HC2-type
Cellular Component	GO:0005634	nucleus
HMMPfam	PF02928	zf-C5HC2	3.1e-15	426-479
no_ID
HMMPanther	PTHR10694	JUMONJI	1.5e-180	55-506
HMMPanther	PTHR10694:SF8	RETINOBLASTOMA	1.5e-180	55-506
Seg	seg	seg	NA	37-55 263-272 805-816
superfamily	SSF51197	Clavaminate	1.5e-34	179-362