Miyakogusa Predicted Gene
- Lj5g3v0616290.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr5
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LZL3_SOYBN |
1764 |
78.3 |
86.1 |
(tr|K7LZL3) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G02880.1 |
983 |
50.2 |
66.0 |
| Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:662643-668847 FORWARD LENGTH=1502 |
| Medicago |
Medtr1g066940.1 |
1717 |
77.8 |
84.5 |
| E3 ubiquitin-protein ligase | HC | chr1:28781562-28771167 | 20130731 |
| Soybean |
Glyma10g05620.2 |
1755 |
78.4 |
86.1 |
|
| LJGI |
gnl|LJGI|GO024143 |
1435 |
99.9 |
99.9 |
similar to UniRef100_A7PSS0 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj5g3v0616290.1 |
length: 1075 aa. |
| IPR000569 |
HECT |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004842 |
ubiquitin-protein ligase activity |
|
|
| Cellular Component |
GO:0005622 |
intracellular |
|
|
| Biological Process |
GO:0006464 |
cellular protein modification process |
|
|
| HMMPfam |
PF00632 |
HECT |
2.4e-89 |
724-1075 |
| HMMSmart |
SM00119 |
Domain |
2.6e-95 |
690-1075 |
| ProfileScan |
PS50237 |
HECT |
61.869 |
692-1075 |
| superfamily |
SSF56204 |
Hect, |
9.7e-92 |
674-1069 |
| no_ID |
|
| HMMPanther |
PTHR11254 |
HECT |
9.4e-210 |
8-1075 |
| HMMPanther |
PTHR11254:SF73 |
HECT |
9.4e-210 |
8-1075 |
| Seg |
seg |
seg |
NA |
363-381 |
- Wolf-PSORT
Lj5g3v0616290.1 nucl 6, cyto 5, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj5g3v0616290.1 |
Not targeted |
-39.087 |
0 |
-9.430 |
51.24% |
-29.657
|