Miyakogusa Predicted Gene

Lj5g3v0539920.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr5
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SSH5_LOTJA 249 93.4 93.4 (tr|I3SSH5) Histone H2A OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G52740.1 216 81.8 86.9 | Symbols: HTA9 | histone H2A protein 9 | chr1:19645409-19646221 FORWARD LENGTH=134
Medicago Medtr1g011850.1 225 86.9 89.8 | core histone H2A/H2B/H3/H4 | HC | chr1:2226797-2223509 | 20130731
Soybean Glyma06g07510.1 234 89.1 91.2  
LJGI gnl|LJGI|TC63189 827 100.0 100.0 homologue to UniRef100_A5AKG7 Cluster: Histone H2A; n=2; core eudicotyledons|Rep: Histone H2A - Vitis vinifera (Grape), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj5g3v0539920.1 length: 137 aa.
IPR002119 Histone H2A
method AccNumber shortName E-value location
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
FPrintScan PR00620 HISTONEH2A 2.7e-43 28-50
58-73
73-86
87-101
114-132
HMMSmart SM00414 Histone 4e-70 17-137
PatternScan PS00046 HISTONE_H2A NA 36-42
IPR007125 Histone core
Molecular Function GO:0003677 DNA binding    
HMMPfam PF00125 Histone 1.7e-22 32-106
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 2.3e-51 20-136
superfamily SSF47113 Histone-fold 1.8e-39 14-114
no_ID  
HMMPanther PTHR23430 HISTONE 9.2e-74 26-133
Seg seg seg NA 20-28
Wolf-PSORT
Lj5g3v0539920.1	nucl 11, cyto 1, mito 1, plas 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj5g3v0539920.1