Miyakogusa Predicted Gene
- Lj5g3v0539920.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0539920.1 tr|I3SSH5|I3SSH5_LOTJA Histone H2A OS=Lotus
japonicus PE=2 SV=1,100,0,HISTONE_H2A,Histone H2A; no
description,Histone-fold; Histone 2A,Histone H2A; HISTONEH2A,Histone
H2A,CUFF.53265.1
(417 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC63189 homologue to UniRef100_A5AKG7 Cluster: Histone ... 827 0.0
gnl|LJGI|TC74241 homologue to UniRef100_A7P5K0 Cluster: Histone ... 258 2e-68
gnl|LJGI|TC81273 homologue to UniRef100_A7P5K0 Cluster: Histone ... 159 2e-38
gnl|LJGI|TC60753 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 107 5e-23
gnl|LJGI|TC63694 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 90 1e-17
gnl|LJGI|TC59007 homologue to UniRef100_Q8H7Y8 Cluster: Probable... 90 1e-17
gnl|LJGI|TC68312 weakly similar to UniRef100_A7QNX3 Cluster: Chr... 54 7e-07
>gnl|LJGI|TC63189 homologue to UniRef100_A5AKG7 Cluster: Histone H2A; n=2; core
eudicotyledons|Rep: Histone H2A - Vitis vinifera
(Grape), partial (89%)
Length = 690
Score = 827 bits (417), Expect = 0.0
Identities = 417/417 (100%)
Strand = Plus / Plus
Query: 1 atgtctggcaaaggcgcaaaggggttgttaactggcagtaaaaccccagcttccgccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 atgtctggcaaaggcgcaaaggggttgttaactggcagtaaaaccccagcttccgccaaa 100
Query: 61 gacaacaaggataacaagaagaaacccacctctcgttcttccagagctggtcttcagttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gacaacaaggataacaagaagaaacccacctctcgttcttccagagctggtcttcagttc 160
Query: 121 cctgttggacgaattcaccgtcttctgaagacaagggtgtcggcgaatggaagagttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cctgttggacgaattcaccgtcttctgaagacaagggtgtcggcgaatggaagagttggg 220
Query: 181 gcaacagctgcagtttacactgctgctatcctggagtacttaactgcggaggtgttggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gcaacagctgcagtttacactgctgctatcctggagtacttaactgcggaggtgttggag 280
Query: 241 ttggccggcaatgcgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttggccggcaatgcgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcag 340
Query: 301 cttgcaatccgcggagacgaagaactagataccctcatcaaaggaactatagctggtggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cttgcaatccgcggagacgaagaactagataccctcatcaaaggaactatagctggtggt 400
Query: 361 ggtgttattcctcatatccacaagtctcttatcaacaaatcttcaaaggaatgaggg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggtgttattcctcatatccacaagtctcttatcaacaaatcttcaaaggaatgaggg 457
>gnl|LJGI|TC74241 homologue to UniRef100_A7P5K0 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
complete
Length = 757
Score = 258 bits (130), Expect = 2e-68
Identities = 289/342 (84%)
Strand = Plus / Plus
Query: 74 acaagaagaaacccacctctcgttcttccagagctggtcttcagttccctgttggacgaa 133
||||||||||| || ||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct: 198 acaagaagaaagccgtttctcgctcctcccgagctggtcttcagttccccgttggacgaa 257
Query: 134 ttcaccgtcttctgaagacaagggtgtcggcgaatggaagagttggggcaacagctgcag 193
|||||||||||||||| | |||| | || | |||||||||||||| || ||||| |
Sbjct: 258 ttcaccgtcttctgaaatcgagggccactgccagcggaagagttggggccaccgctgcgg 317
Query: 194 tttacactgctgctatcctggagtacttaactgcggaggtgttggagttggccggcaatg 253
| ||| ||||||| || || ||||| || || |||||||| |||||| |||| || ||||
Sbjct: 318 tatacgctgctgcgattctcgagtatttgacggcggaggttttggagctggctgggaatg 377
Query: 254 cgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcagcttgcaatccgcg 313
||||||||||||||||||||||||| |||||||| || ||| | ||||| || || ||||
Sbjct: 378 cgagcaaggatctgaaggtgaagcgaattacccctaggcatttgcagctggccattcgcg 437
Query: 314 gagacgaagaactagataccctcatcaaaggaactatagctggtggtggtgttattcctc 373
|||| |||||||| ||||| ||||||||||| || || || || ||||||||||||||||
Sbjct: 438 gagatgaagaacttgatacgctcatcaaagggacgattgcgggcggtggtgttattcctc 497
Query: 374 atatccacaagtctcttatcaacaaatcttcaaaggaatgag 415
|||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct: 498 atattcacaagtctctgatcaataaatcttccaaggaatgag 539
>gnl|LJGI|TC81273 homologue to UniRef100_A7P5K0 Cluster: Histone H2A; n=1; Vitis
vinifera|Rep: Histone H2A - Vitis vinifera (Grape),
partial (90%)
Length = 475
Score = 159 bits (80), Expect = 2e-38
Identities = 257/316 (81%)
Strand = Plus / Plus
Query: 74 acaagaagaaacccacctctcgttcttccagagctggtcttcagttccctgttggacgaa 133
|||||||||||||||| |||||||||||| | || ||||||||||| || |||||| | |
Sbjct: 156 acaagaagaaacccacttctcgttcttcccgtgccggtcttcagtttccggttggaagga 215
Query: 134 ttcaccgtcttctgaagacaagggtgtcggcgaatggaagagttggggcaacagctgcag 193
| ||||| ||| ||||| |||| |||| |||| ||||| || || || ||||| |
Sbjct: 216 tccaccggcttttgaagtcaagaaccacggctcatggtagagtgggagccacggctgctg 275
Query: 194 tttacactgctgctatcctggagtacttaactgcggaggtgttggagttggccggcaatg 253
| ||| ||||||||||| ||||||| | ||||| || || |||||| |||| || ||||
Sbjct: 276 tctactctgctgctatcttggagtatctgactgctgaagtattggagctggctgggaatg 335
Query: 254 cgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcagcttgcaatccgcg 313
| ||||||||||| ||||| ||||| ||||| || || ||||| || ||||| |||||||
Sbjct: 336 ctagcaaggatctcaaggttaagcgtattactcccaggcatctacaacttgctatccgcg 395
Query: 314 gagacgaagaactagataccctcatcaaaggaactatagctggtggtggtgttattcctc 373
| || |||||||| ||||| || || |||||||| || ||||| || |||||||||||||
Sbjct: 396 gtgatgaagaactggatacgctgattaaaggaacaattgctggaggaggtgttattcctc 455
Query: 374 atatccacaagtctct 389
|||| ||||| |||||
Sbjct: 456 atattcacaaatctct 471
>gnl|LJGI|TC60753 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (98%)
Length = 766
Score = 107 bits (54), Expect = 5e-23
Identities = 144/174 (82%)
Strand = Plus / Plus
Query: 241 ttggccggcaatgcgagcaaggatctgaaggtgaagcgcattaccccaagacatcttcag 300
||||| || ||||||||||||||| ||||||||||| | || || || || ||| | |||
Sbjct: 331 ttggctgggaatgcgagcaaggatttgaaggtgaagaggataactcctaggcatttgcag 390
Query: 301 cttgcaatccgcggagacgaagaactagataccctcatcaaaggaactatagctggtggt 360
||||| ||| | ||||| || || || |||||||| |||||||| ||||| |||||||||
Sbjct: 391 cttgctatcaggggagatgaggagcttgataccctgatcaaagggactattgctggtggt 450
Query: 361 ggtgttattcctcatatccacaagtctcttatcaacaaatcttcaaaggaatga 414
||||| |||||||| || |||||||| | ||||||||| || | |||||||||
Sbjct: 451 ggtgtcattcctcacattcacaagtccttgatcaacaaaactgccaaggaatga 504
>gnl|LJGI|TC63694 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (92%)
Length = 732
Score = 89.7 bits (45), Expect = 1e-17
Identities = 144/177 (81%)
Strand = Plus / Plus
Query: 223 actgcggaggtgttggagttggccggcaatgcgagcaaggatctgaaggtgaagcgcatt 282
||||| |||||| ||||| |||| || ||||| ||||||||||||||||||||| | ||
Sbjct: 302 actgctgaggtgctggagctggctgggaatgcaagcaaggatctgaaggtgaagaggatc 361
Query: 283 accccaagacatcttcagcttgcaatccgcggagacgaagaactagataccctcatcaaa 342
|| || | || | ||||| || ||| | ||||| ||||| || || ||||||||||||
Sbjct: 362 acaccgcgtcacttgcagctcgctatcaggggagatgaagagcttgacaccctcatcaaa 421
Query: 343 ggaactatagctggtggtggtgttattcctcatatccacaagtctcttatcaacaaa 399
||||| || |||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 422 ggaaccattgctggtggtggtgtcatccctcacattcacaagtccttgatcaacaaa 478
>gnl|LJGI|TC59007 homologue to UniRef100_Q8H7Y8 Cluster: Probable histone H2A variant
1; n=3; Oryza sativa|Rep: Probable histone H2A variant 1
- Oryza sativa subsp. japonica (Rice), partial (92%)
Length = 789
Score = 89.7 bits (45), Expect = 1e-17
Identities = 144/177 (81%)
Strand = Plus / Plus
Query: 223 actgcggaggtgttggagttggccggcaatgcgagcaaggatctgaaggtgaagcgcatt 282
||||| |||||| ||||| |||| || ||||| ||||||||||||||||||||| | ||
Sbjct: 266 actgctgaggtgctggagctggctgggaatgcaagcaaggatctgaaggtgaagaggatc 325
Query: 283 accccaagacatcttcagcttgcaatccgcggagacgaagaactagataccctcatcaaa 342
|| || | || | ||||| || ||| | ||||| ||||| || || ||||||||||||
Sbjct: 326 acaccgcgtcacttgcagctcgctatcaggggagatgaagagcttgacaccctcatcaaa 385
Query: 343 ggaactatagctggtggtggtgttattcctcatatccacaagtctcttatcaacaaa 399
||||| || |||||||||||||| || ||||| || |||||||| | |||||||||
Sbjct: 386 ggaaccattgctggtggtggtgtcatccctcacattcacaagtccttgatcaacaaa 442
>gnl|LJGI|TC68312 weakly similar to UniRef100_A7QNX3 Cluster: Chromosome chr1
scaffold_135, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_135, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (43%)
Length = 898
Score = 54.0 bits (27), Expect = 7e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 77 agaagaaacccacctctcgttcttccagagctggtcttcagttccctgttggacgaattc 136
|||||||||||| ||| | || |||||||||||| ||||||||| ||||||| | ||||
Sbjct: 84 agaagaaacccatttcttgctcctccagagctggttttcagttccatgttggatgtattc 143
Query: 137 acc 139
|||
Sbjct: 144 acc 146